Afif Elghraoui pushed to branch master at Debian Med / canu
Commits: 243aa28b by Afif Elghraoui at 2018-03-10T17:09:47-05:00 New upstream version 1.7+dfsg - - - - - 72ffbdd9 by Afif Elghraoui at 2018-03-10T17:09:51-05:00 Merge tag 'upstream/1.7+dfsg' Upstream version 1.7+dfsg - - - - - df269544 by Afif Elghraoui at 2018-03-10T18:51:20-05:00 Update handling of MHAP copy The jar file is bundled rather than its source code. The patches to exclude the build directory aren't needed, but Files-Excluded needed to be changed. - - - - - aba64962 by Afif Elghraoui at 2018-03-10T18:52:20-05:00 Refresh patches - - - - - ceb7a203 by Afif Elghraoui at 2018-03-10T18:52:20-05:00 use a wrapper script and leave /usr/lib/canu/ as undisturbed as possible Rather than patching paths, let the canu main program live where it expects to be, just using a wrapper script in /usr/bin. - - - - - 6f15624a by Afif Elghraoui at 2018-03-10T18:53:46-05:00 New upstream version 1.7+dfsg - - - - - 24d6be52 by Afif Elghraoui at 2018-03-10T18:53:50-05:00 Merge tag 'upstream/1.7+dfsg' Upstream version 1.7+dfsg - - - - - 5419d316 by Afif Elghraoui at 2018-03-10T19:08:53-05:00 Remove build system dependency on bundled MHAP - - - - - 0ce0b35d by Afif Elghraoui at 2018-03-10T19:25:44-05:00 fix typo in patch - - - - - 2454ffa4 by Afif Elghraoui at 2018-03-10T19:48:01-05:00 fix path to mhap jar - - - - - d8b271be by Afif Elghraoui at 2018-03-10T19:48:21-05:00 move gnuplot to Depends - - - - - ae4c2a99 by Afif Elghraoui at 2018-03-10T20:16:24-05:00 Bump mhap minimum version - - - - - b673b3d8 by Afif Elghraoui at 2018-03-10T20:17:39-05:00 Bump Standards-Version to 4.1.3 - - - - - 4eafc31f by Afif Elghraoui at 2018-03-10T23:45:30-05:00 Update changelog (need update to mhap package) - - - - - 30 changed files: - README.md - addCopyrights-BuildData.pl - addCopyrights.dat - addCopyrights.pl - + debian/bin/canu - debian/changelog - debian/control - debian/copyright - debian/install - − debian/links - − debian/patches/external-deps.patch - + debian/patches/external-mhap.patch - debian/patches/gcc-7_format-security.patch - − debian/patches/relative-paths.patch - debian/patches/series - debian/patches/use-debian-mhap-at-runtime.patch - debian/rules - documentation/reST-markup-hints - documentation/source/conf.py - documentation/source/faq.rst - documentation/source/parameter-reference.rst - documentation/source/quick-start.rst - documentation/source/tutorial.rst - src/AS_UTL/AS_UTL_alloc.H - src/AS_UTL/AS_UTL_fasta.C - src/AS_UTL/AS_UTL_fasta.H - src/AS_UTL/AS_UTL_fileIO.C - src/AS_UTL/AS_UTL_fileIO.H - src/AS_UTL/AS_UTL_reverseComplement.C - src/AS_UTL/AS_UTL_reverseComplement.H The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/canu/compare/5bffe33302bbe0f1210c01a75d6b0ca04b026ffa...4eafc31fe7e77b532289eb68cff4b3e81970b033 --- View it on GitLab: https://salsa.debian.org/med-team/canu/compare/5bffe33302bbe0f1210c01a75d6b0ca04b026ffa...4eafc31fe7e77b532289eb68cff4b3e81970b033 You're receiving this email because of your account on salsa.debian.org.
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