Aikaterini Kalou pushed to branch master at Debian Med / rsem
Commits: 18c02c28 by Aikaterini Kalou at 2018-03-14T19:20:57+02:00 Added autopkgtest - - - - - 8 changed files: - + debian/README.test - debian/changelog - + debian/examples/mouse_ref_building_from_transcripts.tar.gz - debian/rsem.docs - + debian/rsem.examples - + debian/source/include-binaries - + debian/tests/control - + debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== --- /dev/null +++ b/debian/README.test @@ -0,0 +1,14 @@ +Notes on how this package can be tested. + + +This package can be tested by executing + + sh run-unit-test + +in order to confirm its integrity. + +Note: The sample data are obtained via + + wget -q https://www.dropbox.com/s/ie67okalzaw8zzj/mouse_ref_building_from_transcripts.tar.gz?dl=0 -O debian/examples/mouse_ref_building_from_transcripts.tar.gz + +More examples and datasets can be found at https://github.com/bli25ucb/RSEM_tutorial ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,15 +1,19 @@ -rsem (1.3.0+dfsg-1) experimental; urgency=medium +rsem (1.3.0+dfsg-2) UNRELEASED; urgency=medium + + * Team upload. + * Add autopkgtest + + -- Katerina Kalou <[email protected]> Wed, 14 Mar 2018 18:32:55 +0200 + +rsem (1.3.0+dfsg-1) UNRELEASED; urgency=medium * New upstream version * d/watch: - version=4 - xz compression * remove code copy of samtools-1.3 - * cme fix dpkg-control - * debhelper 11 - * d/rules: do not parse d/changelog - -- Andreas Tille <[email protected]> Sun, 18 Feb 2018 20:34:37 +0100 + -- Andreas Tille <[email protected]> Fri, 09 Dec 2016 14:26:08 +0100 rsem (1.2.31+dfsg-1) unstable; urgency=medium ===================================== debian/examples/mouse_ref_building_from_transcripts.tar.gz ===================================== Binary files /dev/null and b/debian/examples/mouse_ref_building_from_transcripts.tar.gz differ ===================================== debian/rsem.docs ===================================== --- a/debian/rsem.docs +++ b/debian/rsem.docs @@ -1,4 +1,7 @@ README.md +debian/README.test WHAT_IS_NEW cnt_file_description.txt model_file_description.txt +debian/tests/run-unit-test + ===================================== debian/rsem.examples ===================================== --- /dev/null +++ b/debian/rsem.examples @@ -0,0 +1,2 @@ +debian/examples/* + ===================================== debian/source/include-binaries ===================================== --- /dev/null +++ b/debian/source/include-binaries @@ -0,0 +1,2 @@ +mouse_ref_building_from_transcripts.tar.gz + ===================================== debian/tests/control ===================================== --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,4 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr + ===================================== debian/tests/run-unit-test ===================================== --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,21 @@ +#!/bin/bash +set -e +set -x + +pkg="rsem" + + +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP + +cd $AUTOPKGTEST_TMP + +tar -C . -xzf *.tar.gz + +rsem-prepare-reference \ + --transcript-to-gene-map mouse_ref_mapping.txt \ + mouse_ref.fa mouse_ref View it on GitLab: https://salsa.debian.org/med-team/rsem/commit/18c02c28e5532ea89d54d4cee22af12584c4e0f3 --- View it on GitLab: https://salsa.debian.org/med-team/rsem/commit/18c02c28e5532ea89d54d4cee22af12584c4e0f3 You're receiving this email because of your account on salsa.debian.org.
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