Andreas Tille pushed to branch upstream at Debian Med / htsjdk
Commits: 26feb9cc by Andreas Tille at 2018-03-28T14:18:36+02:00 New upstream version 2.14.3+dfsg - - - - - 30 changed files: - .gitignore - build.gradle - src/main/java/htsjdk/samtools/BAMFileWriter.java - src/main/java/htsjdk/samtools/Defaults.java - src/main/java/htsjdk/samtools/DownsamplingIteratorFactory.java - src/main/java/htsjdk/samtools/NotPrimarySkippingIterator.java - src/main/java/htsjdk/samtools/SAMFileHeader.java - src/main/java/htsjdk/samtools/SAMFileWriterFactory.java - src/main/java/htsjdk/samtools/SAMFlag.java - src/main/java/htsjdk/samtools/SAMRecord.java - src/main/java/htsjdk/samtools/SAMRecordQueryNameComparator.java - src/main/java/htsjdk/samtools/SAMRecordSetBuilder.java - − src/main/java/htsjdk/samtools/SAMRecordUtil.java - src/main/java/htsjdk/samtools/SAMUtils.java - src/main/java/htsjdk/samtools/SAMValidationError.java - src/main/java/htsjdk/samtools/SamFileValidator.java - src/main/java/htsjdk/samtools/SamFlagField.java - src/main/java/htsjdk/samtools/SamInputResource.java - src/main/java/htsjdk/samtools/SamReaderFactory.java - + src/main/java/htsjdk/samtools/SecondaryAlignmentSkippingIterator.java - src/main/java/htsjdk/samtools/SecondaryOrSupplementarySkippingIterator.java - src/main/java/htsjdk/samtools/cram/build/Cram2SamRecordFactory.java - src/main/java/htsjdk/samtools/cram/build/Sam2CramRecordFactory.java - src/main/java/htsjdk/samtools/cram/ref/EnaRefService.java - src/main/java/htsjdk/samtools/filter/NotPrimaryAlignmentFilter.java - src/main/java/htsjdk/samtools/filter/ReadNameFilter.java - src/main/java/htsjdk/samtools/filter/SecondaryAlignmentFilter.java - src/main/java/htsjdk/samtools/filter/SecondaryOrSupplementaryFilter.java - src/main/java/htsjdk/samtools/filter/TagFilter.java - src/main/java/htsjdk/samtools/liftover/LiftOver.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/26feb9cc4a546debcbd8191529e4135e210b964a --- View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/26feb9cc4a546debcbd8191529e4135e210b964a You're receiving this email because of your account on salsa.debian.org.
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