Andreas Tille pushed to branch master at Debian Med / htsjdk
Commits: 26feb9cc by Andreas Tille at 2018-03-28T14:18:36+02:00 New upstream version 2.14.3+dfsg - - - - - 0c4c86ec by Andreas Tille at 2018-03-28T14:18:54+02:00 Update upstream source from tag 'upstream/2.14.3+dfsg' Update to upstream version '2.14.3+dfsg' with Debian dir f3cb3f9088d070b7bd9c7562139c0c4a17af8e82 - - - - - afe5dc32 by Andreas Tille at 2018-03-28T14:22:08+02:00 New upstream version - - - - - f2dd84b2 by Andreas Tille at 2018-03-28T14:22:17+02:00 Update pom files - - - - - 39dd500d by Andreas Tille at 2018-03-28T14:22:46+02:00 Standards-Version: 4.1.3 - - - - - 7e7b3488 by Andreas Tille at 2018-03-28T14:31:01+02:00 Adapt quilt patches - - - - - b29ccd1b by Andreas Tille at 2018-03-28T14:33:21+02:00 Drop warning and upload to experimental until picard-tools will catch up - - - - - 0fa566a1 by Andreas Tille at 2018-03-28T14:54:02+02:00 Make sure the package will not incidentally uploaded to unstable - - - - - 30 changed files: - .gitignore - build.gradle - debian/changelog - debian/control - debian/htsjdk.pom - debian/htsjdk.pom.asc - debian/patches/13-skip_network_tests - debian/patches/30-disable-scalatest.patch - src/main/java/htsjdk/samtools/BAMFileWriter.java - src/main/java/htsjdk/samtools/Defaults.java - src/main/java/htsjdk/samtools/DownsamplingIteratorFactory.java - src/main/java/htsjdk/samtools/NotPrimarySkippingIterator.java - src/main/java/htsjdk/samtools/SAMFileHeader.java - src/main/java/htsjdk/samtools/SAMFileWriterFactory.java - src/main/java/htsjdk/samtools/SAMFlag.java - src/main/java/htsjdk/samtools/SAMRecord.java - src/main/java/htsjdk/samtools/SAMRecordQueryNameComparator.java - src/main/java/htsjdk/samtools/SAMRecordSetBuilder.java - − src/main/java/htsjdk/samtools/SAMRecordUtil.java - src/main/java/htsjdk/samtools/SAMUtils.java - src/main/java/htsjdk/samtools/SAMValidationError.java - src/main/java/htsjdk/samtools/SamFileValidator.java - src/main/java/htsjdk/samtools/SamFlagField.java - src/main/java/htsjdk/samtools/SamInputResource.java - src/main/java/htsjdk/samtools/SamReaderFactory.java - + src/main/java/htsjdk/samtools/SecondaryAlignmentSkippingIterator.java - src/main/java/htsjdk/samtools/SecondaryOrSupplementarySkippingIterator.java - src/main/java/htsjdk/samtools/cram/build/Cram2SamRecordFactory.java - src/main/java/htsjdk/samtools/cram/build/Sam2CramRecordFactory.java - src/main/java/htsjdk/samtools/cram/ref/EnaRefService.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/htsjdk/compare/8ec0970c1170e86972bbfa88f0bc513e96950c51...0fa566a17784405b9a78b7fdc1a673f2fccba59b --- View it on GitLab: https://salsa.debian.org/med-team/htsjdk/compare/8ec0970c1170e86972bbfa88f0bc513e96950c51...0fa566a17784405b9a78b7fdc1a673f2fccba59b You're receiving this email because of your account on salsa.debian.org.
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