Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq
Commits: a0c58d95 by Michael R. Crusoe at 2018-03-28T07:03:57-07:00 Update watch to grab sample data - - - - - e476fc2e by Michael R. Crusoe at 2018-03-28T07:04:12-07:00 New upstream version 2.6.5+dfsg - - - - - 8187ddaf by Michael R. Crusoe at 2018-03-28T07:05:07-07:00 2.6.5+dfsg-1 - - - - - 29 changed files: - Analysis/DifferentialExpression/GOplot.Rscript - + Analysis/DifferentialExpression/plot_log2FC_hist.Rscript - Analysis/DifferentialExpression/rename_matrix_feature_identifiers.pl - Analysis/DifferentialExpression/run_DE_analysis.pl - Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py - + Analysis/SuperTranscripts/AllelicVariants/util/clean_bam.pl - Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl - Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py - + Analysis/SuperTranscripts/_misc/aln_before_after.pl - + Analysis/SuperTranscripts/pylib/Compact_graph_partial.py - + Analysis/SuperTranscripts/pylib/Compact_graph_whole.py - + Analysis/SuperTranscripts/pylib/DP_matrix.py - + Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py - + Analysis/SuperTranscripts/pylib/GraphCycleException.py - + Analysis/SuperTranscripts/pylib/Node_alignment.py - + Analysis/SuperTranscripts/pylib/Node_path.py - + Analysis/SuperTranscripts/pylib/Splice_model_refiner.py - + Analysis/SuperTranscripts/pylib/TGLOBALS.py - + Analysis/SuperTranscripts/pylib/TGraph.py - + Analysis/SuperTranscripts/pylib/TNode.py - + Analysis/SuperTranscripts/pylib/Topological_sort.py - + Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py - + Analysis/SuperTranscripts/pylib/Trinity_util.py - + Analysis/SuperTranscripts/pylib/__init__.py - Butterfly/src/src/TransAssembly_allProbPaths.java - Changelog.txt - Chrysalis/Makefile - Makefile - PyLib/Pipeliner.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/compare/9cead657dc8e6265d6370293e1ea6acc12d4364d...8187ddaf3518c2c92590754c668267eea77a5d56 --- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/compare/9cead657dc8e6265d6370293e1ea6acc12d4364d...8187ddaf3518c2c92590754c668267eea77a5d56 You're receiving this email because of your account on salsa.debian.org.
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