Liubov Chuprikova pushed to branch master at Debian Med / ncbi-tools6
Commits: 4ff9301c by Liubov Chuprikova at 2018-04-05T10:59:57+00:00 Autopkgtest: changed test data file to smaller one - - - - - 5 changed files: - debian/copyright - debian/source/include-binaries - debian/tests/run-unit-test - + debian/tests/test-data/nc0225.aso.gz - − debian/tests/test-data/nc0305.aso.gz Changes: ===================================== debian/copyright ===================================== --- a/debian/copyright +++ b/debian/copyright @@ -13,13 +13,13 @@ Copyright: 1998-1999 Stephane Bortzmeyer <[email protected]> 2001-2017 Aaron M. Ucko <[email protected]> License: public_domain -Files: debian/tests/test-data/nc0305.aso.gz +Files: debian/tests/test-data/nc0225.aso.gz debian/tests/test-data/dsRNA_viruses.ags.gz Copyright: 1996-2018 NCBI License: public_domain Comment: To dowload the files use: - wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0305.aso.gz + wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0225.aso.gz wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ASN_BINARY/Viruses/dsRNA_viruses.ags.gz Files: debian/tests/test-data/trnascan-se_sample.output ===================================== debian/source/include-binaries ===================================== --- a/debian/source/include-binaries +++ b/debian/source/include-binaries @@ -1,2 +1,2 @@ -debian/tests/test-data/nc0305.aso.gz +debian/tests/test-data/nc0225.aso.gz debian/tests/test-data/dsRNA_viruses.ags.gz ===================================== debian/tests/run-unit-test ===================================== --- a/debian/tests/run-unit-test +++ b/debian/tests/run-unit-test @@ -14,43 +14,43 @@ cp /usr/share/ncbi/data/autofix.prt . gunzip *.gz echo '---asn2all test---' -/usr/bin/asn2all -i nc0305.aso -b -f g -o nc0305.nuc -v nc0305.prt -[ -s nc0305.nuc ] -[ -s nc0305.prt ] +/usr/bin/asn2all -i nc0225.aso -b -f g -o nc0225.nuc -v nc0225.prt +[ -s nc0225.nuc ] +[ -s nc0225.prt ] echo '---asn2asn test---' -/usr/bin/asn2asn -i nc0305.aso -b -o nc0305.text -[ -s nc0305.text ] +/usr/bin/asn2asn -i nc0225.aso -b -o nc0225.text +[ -s nc0225.text ] echo '---asn2fsa test---' -/usr/bin/asn2fsa -i nc0305.aso -b -a t -o nc0305.fna -v nc0305.faa -[ -s nc0305.fna ] -[ -s nc0305.faa ] +/usr/bin/asn2fsa -i nc0225.aso -b -a t -o nc0225.fna -v nc0225.faa +[ -s nc0225.fna ] +[ -s nc0225.faa ] echo '---asn2gb test---' -/usr/bin/asn2gb -i nc0305.aso -b -a t -o nc0305.gbk -[ -s nc0305.gbk ] +/usr/bin/asn2gb -i nc0225.aso -b -a t -o nc0225.gbk +[ -s nc0225.gbk ] echo '---asn2idx test---' -/usr/bin/asn2idx -b -p . < nc0305.aso -[ -s nc0305.idx ] +/usr/bin/asn2idx -b -p . < nc0225.aso +[ -s nc0225.idx ] [ -s master.idx ] echo '---asn2xml test---' -/usr/bin/asn2xml -i nc0305.aso -o nc0305.xml -[ -s nc0305.xml ] +/usr/bin/asn2xml -i nc0225.aso -o nc0225.xml +[ -s nc0225.xml ] echo '---asndisc test---' -/usr/bin/asndisc -i nc0305.aso -b -a t -o nc0305.disc -[ -s nc0305.disc ] +/usr/bin/asndisc -i nc0225.aso -b -a t -o nc0225.disc +[ -s nc0225.disc ] echo '---asnval test---' -/usr/bin/asnval -i nc0305.aso -b -a t -o nc0305.val -[ -f nc0305.val ] -[ ! -s nc0305.val ] # empty +/usr/bin/asnval -i nc0225.aso -b -a t -o nc0225.val +[ -f nc0225.val ] +[ ! -s nc0225.val ] # empty echo '---asnmacro test---' -/usr/bin/asnmacro -i nc0305.aso -b -m autofix.prt -o asnmacro.output +/usr/bin/asnmacro -i nc0225.aso -b -m autofix.prt -o asnmacro.output [ -s asnmacro.output ] echo '---asntool test---' @@ -58,8 +58,8 @@ echo '---asntool test---' [ -s asntool.output ] echo '---cleanasn test---' -/usr/bin/cleanasn -b -a t -D t -i nc0305.aso -o nc0305_cleaned.aso -[ -s nc0305_cleaned.aso ] +/usr/bin/cleanasn -b -a t -D t -i nc0225.aso -o nc0225_cleaned.aso +[ -s nc0225_cleaned.aso ] echo '---debruijn test---' /usr/bin/debruijn -a ncbistdaa -n 4 > debruijn.output @@ -69,7 +69,7 @@ echo '---gene2xml test---' /usr/bin/gene2xml -b -i dsRNA_viruses.ags -o dsRNA_viruses.xgs [ -s dsRNA_viruses.xgs ] -grep 'GI:' nc0305.gbk | head | sed 's/.*GI://' > GIs.txt +grep 'GI:' nc0225.gbk | head | sed 's/.*GI://' > GIs.txt # _insdseqget_ and _idfetch_ testing requires internet connection. # Comment the lines below to skip the testing. echo '---insdseqget test---' ===================================== debian/tests/test-data/nc0225.aso.gz ===================================== Binary files /dev/null and b/debian/tests/test-data/nc0225.aso.gz differ ===================================== debian/tests/test-data/nc0305.aso.gz deleted ===================================== Binary files a/debian/tests/test-data/nc0305.aso.gz and /dev/null differ View it on GitLab: https://salsa.debian.org/med-team/ncbi-tools6/commit/4ff9301c215bfb41c1c5f25b5d2a9216c52eb9cc --- View it on GitLab: https://salsa.debian.org/med-team/ncbi-tools6/commit/4ff9301c215bfb41c1c5f25b5d2a9216c52eb9cc You're receiving this email because of your account on salsa.debian.org.
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