Alexandre Mestiashvili pushed to branch master at Debian Med / fasta3
Commits: 0ddc6997 by Alexandre Mestiashvili at 2018-04-19T11:40:11+02:00 Add zlib1g-dev to Build-Depends - - - - - dc5e2b83 by Alexandre Mestiashvili at 2018-04-19T11:48:56+02:00 Apply cme fix dpkg, fixing indentation, secure url and patch descriptions - - - - - a108857c by Alexandre Mestiashvili at 2018-04-19T11:53:40+02:00 Update changelog, merge changelog entries Gbp-Dch: Ignore - - - - - 5 changed files: - debian/changelog - debian/control - debian/copyright - debian/patches/Makefile.patch - debian/patches/OVERFLOW.patch Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,17 +1,17 @@ fasta3 (36.3.8g-1) unstable; urgency=low + [ Andreas Tille ] + * Moved packaging from SVN to Git + + [ Steffen Moeller] * Initial release (Closes: #895740) * New upstream version. * Fixed remaining lintian error. * Bumped policy to 4.1.4. + [ Alexandre Mestiashvili] + * Add zlib1g-dev to Build-Depends + * Apply cme fix dpkg, fixing indentation, secure url and patch descriptions -- Steffen Moeller <[email protected]> Sun, 15 Apr 2018 16:08:39 +0200 - -fasta3 (36.3.8f-1) UNRELEASED; urgency=low - - [ Andreas Tille ] - * Moved packaging from SVN to Git - - -- Steffen Moeller <[email protected]> Tue, 05 Dec 2017 17:19:26 +0100 ===================================== debian/control ===================================== --- a/debian/control +++ b/debian/control @@ -1,17 +1,20 @@ Source: fasta3 -Section: non-free/science -Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Steffen Moeller <[email protected]> -Build-Depends: debhelper (>= 9) -Standards-Version: 4.1.4 +Section: non-free/science +XS-Autobuild: no +Priority: optional +Build-Depends: debhelper (>= 9), + zlib1g-dev +Standards-Version: 4.1.3 Vcs-Browser: https://salsa.debian.org/med-team/fasta3 Vcs-Git: https://salsa.debian.org/med-team/fasta3.git Homepage: http://fasta.bioch.virginia.edu Package: fasta3 Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} +Depends: ${shlibs:Depends}, + ${misc:Depends} Description: tools for searching collections of biological sequences The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, @@ -21,7 +24,7 @@ Description: tools for searching collections of biological sequences evolutionary relationships between sequences as well as help identify members of gene families. . - * Protein + * Protein . - Protein-protein FASTA - Protein-protein Smith-Waterman (ssearch) @@ -29,28 +32,28 @@ Description: tools for searching collections of biological sequences - Global/Local protein-protein (glsearch) - Protein-protein with unordered peptides (fasts) - Protein-protein with mixed peptide sequences (fastf) - . - * Nucleotide + . + * Nucleotide . - Nucleotide-Nucleotide (DNA/RNA fasta) - Ordered Nucleotides vs Nucleotide (fastm) - Un-ordered Nucleotides vs Nucleotide (fasts) . - * Translated + * Translated . - Translated DNA (with frameshifts, e.g. ESTs) vs Proteins (fastx/fasty) - Protein vs Translated DNA (with frameshifts) (tfastx/tfasty) - Peptides vs Translated DNA (tfasts) - . - * Statistical Significance + . + * Statistical Significance . - Protein vs Protein shuffle (prss) - DNA vs DNA shuffle (prss) - Translated DNA vs Protein shuffle (prfx) . - * Local Duplications + * Local Duplications . - Local Protein alignments (lalign) - Plot Protein alignment "dot-plot" (plalign) @@ -59,7 +62,8 @@ Description: tools for searching collections of biological sequences Package: fasta3-doc Architecture: all -Depends: ${shlibs:Depends}, ${misc:Depends} +Depends: ${shlibs:Depends}, + ${misc:Depends} Description: user guide for FASTA tools The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, @@ -72,4 +76,3 @@ Description: user guide for FASTA tools The use of the package's many binaries and the equally representated conceptual approaches towards sequence analyses are summarised in this PDF. - ===================================== debian/copyright ===================================== --- a/debian/copyright +++ b/debian/copyright @@ -1,4 +1,4 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: FASTA Source: http://faculty.virginia.edu/wrpearson/fasta/fasta3/ ===================================== debian/patches/Makefile.patch ===================================== --- a/debian/patches/Makefile.patch +++ b/debian/patches/Makefile.patch @@ -1,3 +1,4 @@ +Description: Makefile Index: fasta3/make/Makefile =================================================================== --- fasta3.orig/make/Makefile ===================================== debian/patches/OVERFLOW.patch ===================================== --- a/debian/patches/OVERFLOW.patch +++ b/debian/patches/OVERFLOW.patch @@ -1,3 +1,4 @@ +Description: OVERFLOW Index: fasta3/src/dropnnw2.c =================================================================== --- fasta3.orig/src/dropnnw2.c View it on GitLab: https://salsa.debian.org/med-team/fasta3/compare/3a6f5541ac0d1fe349cd6d1da163807e9e009f55...a108857cbc797e3c229253c245789124b63438f0 --- View it on GitLab: https://salsa.debian.org/med-team/fasta3/compare/3a6f5541ac0d1fe349cd6d1da163807e9e009f55...a108857cbc797e3c229253c245789124b63438f0 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
