Steffen Möller pushed to branch upstream at Debian Med / pal2nal
Commits: 4f7f0eac by Steffen Moeller at 2018-05-10T00:58:29+02:00 New upstream version 14.1 - - - - - 2 changed files: - README - pal2nal.pl Changes: ===================================== README ===================================== --- a/README +++ b/README @@ -14,8 +14,9 @@ # version 12.2 September 9, 2009 # # version 13.0 July 26, 2010 # # version 14.0 December 2, 2011 # +# version 14.1 October 17, 2017 # # # -# Mikita Suyama ([email protected]) # +# Mikita Suyama ([email protected]) # # # #=================================================================# @@ -35,6 +36,9 @@ The resulting codon-based DNA alignment can further be subjected to the calculation of synonymous (Ks) and non-synonymous (Ka) substitution rates. +The script is licensed under GPL v2. + + #-----------# # Reference @@ -176,7 +180,7 @@ Example: http://www.bork.embl.de/pal2nal or -http://www.genome.med.kyoto-u.ac.jp/cgi-bin/suyama/pal2nal/index.cgi +http://www.genome.med.kyoto-u.ac.jp/cgi-bin/suyama/pal2nal/index.cgi (not working) #---------# @@ -186,10 +190,10 @@ http://www.genome.med.kyoto-u.ac.jp/cgi-bin/suyama/pal2nal/index.cgi If you have any questions or comments, please email me: Mikita Suyama - Center for Genomic Medicine, - Graduate School of Medicine, Kyoto University, - 606-8501 Kyoto, JAPAN - tel: +81 75 753 4383 - fax: +81 75 753 4382 - email: [email protected] + Medical Institute of Bioregulation + Kyushu University, + 812-8582 Fukuoka, JAPAN + tel: +81 92 642 6384 + fax: +81 92 642 6562 + email: [email protected] ===================================== pal2nal.pl ===================================== --- a/pal2nal.pl +++ b/pal2nal.pl @@ -1,6 +1,13 @@ #!/usr/bin/perl +# pal2nal.pl (c) 2017 Mikita Suyama <[email protected]> # -# pal2nal.pl (v14) Mikita Suyama +# #----------------------------------------# +# This script is licensed under GPL v2.0 +# #----------------------------------------# +# +# +# +# pal2nal.pl (v14.1) Mikita Suyama # # Usage: pal2nal.pl pep.aln nuc.fasta [nuc.fasta...] [options] > output # @@ -56,6 +63,10 @@ # NUC1 GCTTGTGATGAATTTGGTGCTCGTCATG--GGG---TTTTAA # NUC2 GCGGG-GACGACTGG---GCGTAGCAC---GGGGG-TTTTGA # +# +# v14.1 +# - licensed under GPL v2.0 +# 2017/10/17 # v14. # - NCBI GenBank codon table # 1 Universal code View it on GitLab: https://salsa.debian.org/med-team/pal2nal/commit/4f7f0eac281f33e7937dc5cdc402246673c68984 --- View it on GitLab: https://salsa.debian.org/med-team/pal2nal/commit/4f7f0eac281f33e7937dc5cdc402246673c68984 You're receiving this email because of your account on salsa.debian.org.
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