Liubov Chuprikova pushed to branch master at Debian Med / primer3
Commits:
26d7d5fe by Liubov Chuprikova at 2018-05-29T12:55:22+02:00
Skip one more test, missed earlier
- - - - -
1 changed file:
- debian/rules
Changes:
=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -8,9 +8,11 @@
sampledir:=$(CURDIR)/debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/e
BUILDARCH:=$(shell dpkg-architecture -q DEB_BUILD_ARCH_ENDIAN)
-FAILED_TESTS:='primer_masker' \
+P3CORE_FAILED_TESTS:='primer_masker' \
'primer_masker_formatted'
+FAILED_TESTS:=testmasker
+
%:
dh $@ --sourcedirectory=src
@@ -20,14 +22,18 @@ override_dh_auto_build:
override_dh_auto_test:
ifneq ($(BUILDARCH),little)
cp -a test/p3test.pl test/p3test.pl~
+ cp -a test/Makefile test/Makefile~
# exclude tests known to fail on big endian
# See README.source for further explanation.
- for tst in $(FAILED_TESTS) ; do sed -i "/$${tst}/d" test/p3test.pl ;
done
+ for tst in $(P3CORE_FAILED_TESTS) ; do sed -i "/$${tst}/d"
test/p3test.pl ; done
+ sed -i "0,/$(FAILED_TESTS)/s///" test/Makefile
+ sed -i "/$(FAILED_TESTS)/,/endif/d" test/Makefile
endif
dh_auto_test --sourcedirectory=test
ifneq ($(BUILDARCH),little)
# restore original test file
mv test/p3test.pl~ test/p3test.pl
+ mv test/Makefile~ test/Makefile
endif
dh clean --sourcedirectory=test
@@ -36,9 +42,13 @@ override_dh_installexamples:
dh_installexamples
mkdir -p $(sampledir)/test;
mkdir -p $(sampledir)/src;
+ mkdir -p $(sampledir)/settings_files;
+ mkdir -p $(sampledir)/kmer_lists;
cp -aR ./test/* $(sampledir)/test;
cp -aR ./src/humrep_and_simple.txt $(sampledir)/src;
- cp -a settings_files/primer*.txt $(sampledir)/;
+ cp -a settings_files/primer*.txt $(sampledir)/settings_files;
+ cp -aR ./kmer_lists/*.list $(sampledir)/kmer_lists;
+
chmod -x $(sampledir)/test/thal*;
sed -i 's#/usr/local/bin/perl#/usr/bin/perl#'
$(sampledir)/test/long_seq_tm_test.pl ;
sed -i 's#/usr/local/bin/perl#/usr/bin/perl#'
$(sampledir)/test/vgrep.pl ;
View it on GitLab:
https://salsa.debian.org/med-team/primer3/commit/26d7d5fe8caa561de98e0f59a1dd5ae0ecabd7fa
--
View it on GitLab:
https://salsa.debian.org/med-team/primer3/commit/26d7d5fe8caa561de98e0f59a1dd5ae0ecabd7fa
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