Steffen Möller pushed to branch master at Debian Med / python-gffutils
Commits: d75421ee by Steffen Moeller at 2018-07-08T01:49:22+02:00 Added packages for Python version 2 Needed for bcbio. - - - - - 3 changed files: - debian/changelog - debian/control - debian/rules Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -8,6 +8,8 @@ python-gffutils (0.9-1) UNRELEASED; urgency=medium * d/u/metadata: Added RRIDs + * Added Python 2 packages, separated executable + -- Steffen Moeller <[email protected]> Sun, 15 Apr 2018 14:03:00 +0200 python-gffutils (0.8.7.1-1) REMOVED; urgency=medium ===================================== debian/control ===================================== --- a/debian/control +++ b/debian/control @@ -6,7 +6,14 @@ Priority: optional Build-Depends: debhelper (>= 10), dh-python, bedtools, - python3, + python-all, + python-setuptools, + python-simplejson, + python-six, + python-pyfaidx, + python-nose, + python-biopython, + python-pybedtools, python3-all, python3-setuptools, python3-simplejson, @@ -17,11 +24,24 @@ Build-Depends: debhelper (>= 10), python3-nose, python3-biopython, python3-pybedtools -Standards-Version: 4.1.4 +Standards-Version: 4.1.3 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/python-gffutils.git Vcs-Git: https://anonscm.debian.org/git/debian-med/python-gffutils.git Homepage: https://daler.github.io/gffutils +Package: python-gffutils +Architecture: all +Depends: ${python2:Depends}, + ${misc:Depends} +Description: Work with GFF and GTF files in a flexible database framework + A Python package for working with and manipulating the GFF and GTF format + files typically used for genomic annotations. Files are loaded into a + sqlite3 database, allowing much more complex manipulation of hierarchical + features (e.g., genes, transcripts, and exons) than is possible with + plain-text methods alone. + . + This is the Python 2 version. + Package: python3-gffutils Architecture: all Depends: ${python3:Depends}, @@ -32,3 +52,29 @@ Description: Work with GFF and GTF files in a flexible database framework sqlite3 database, allowing much more complex manipulation of hierarchical features (e.g., genes, transcripts, and exons) than is possible with plain-text methods alone. + . + This is the Python 3 version. + +Package: python-gffutils-bin +Architecture: all +Depends: ${misc:Depends}, python-gffutils +Description: Work with GFF and GTF files in a flexible database framework + A Python package for working with and manipulating the GFF and GTF format + files typically used for genomic annotations. Files are loaded into a + sqlite3 database, allowing much more complex manipulation of hierarchical + features (e.g., genes, transcripts, and exons) than is possible with + plain-text methods alone. + . + This package offers Python 2 executables. + +Package: python3-gffutils-bin +Architecture: all +Depends: ${misc:Depends}, python3-gffutils +Description: Work with GFF and GTF files in a flexible database framework + A Python package for working with and manipulating the GFF and GTF format + files typically used for genomic annotations. Files are loaded into a + sqlite3 database, allowing much more complex manipulation of hierarchical + features (e.g., genes, transcripts, and exons) than is possible with + plain-text methods alone. + . + This package offers Python 3 executables. ===================================== debian/rules ===================================== --- a/debian/rules +++ b/debian/rules @@ -6,4 +6,13 @@ export PYBUILD_NAME=gffutils export PYBUILD_DISABLE=test # https://github.com/daler/gffutils/issues/91 %: - dh $@ --with python3 --buildsystem=pybuild + dh $@ --with python2,python3 --buildsystem=pybuild + +override_dh_auto_install: + dh_auto_install + mkdir -p debian/python-gffutils-bin/usr/bin + mkdir -p debian/python3-gffutils-bin/usr/bin + mv debian/python-gffutils/usr/bin/* debian/python-gffutils-bin/usr/bin/ + mv debian/python3-gffutils/usr/bin/* debian/python3-gffutils-bin/usr/bin/ + rm -rf debian/python-gffutils/usr/bin debian/python3-gffutils/usr/bin + View it on GitLab: https://salsa.debian.org/med-team/python-gffutils/commit/d75421eecef27a0079d2a7bea3b57748f18d8cf2 -- View it on GitLab: https://salsa.debian.org/med-team/python-gffutils/commit/d75421eecef27a0079d2a7bea3b57748f18d8cf2 You're receiving this email because of your account on salsa.debian.org.
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