Dylan Aïssi pushed to branch master at Debian Med / plink1.9
Commits: 521762b6 by Dylan Aïssi at 2018-08-22T16:11:36Z New upstream version 1.90~b6.4-180807 - - - - - b5ed39c4 by Dylan Aïssi at 2018-08-22T16:11:40Z Merge tag 'upstream/1.90_b6.4-180807' Upstream version 1.90~b6.4-180807 - - - - - 61d28176 by Dylan Aïssi at 2018-08-22T16:13:24Z Update changelogs - - - - - e3911803 by Dylan Aïssi at 2018-08-22T16:21:33Z Upload to unstable - - - - - 4 changed files: - debian/changelog - debian/upstream.docs/upstream.changelog - plink.c - plink_assoc.c Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9 @@ +plink1.9 (1.90~b6.4-180807-1) unstable; urgency=medium + + * New upstream release. + + -- Dylan Aïssi <[email protected]> Wed, 22 Aug 2018 18:11:44 +0200 + plink1.9 (1.90~b6.3-180717-1) unstable; urgency=medium * New upstream release. ===================================== debian/upstream.docs/upstream.changelog ===================================== --- a/debian/upstream.docs/upstream.changelog +++ b/debian/upstream.docs/upstream.changelog @@ -1,6 +1,8 @@ # Copy/Paste from https://www.cog-genomics.org/plink/1.9/ -17 Jul 2018: Fixed uninitialized --make-set-border value bug. +7 Aug 2018: --assoc set-test bugfix. + +17 Jul: Fixed uninitialized --make-set-border value bug. 12 Jun: "--assoc fisher"'s multiple testing corrections no longer treat zero-MAF variants as valid tests. ===================================== plink.c ===================================== --- a/plink.c +++ b/plink.c @@ -93,7 +93,7 @@ static const char ver_str[] = #ifdef STABLE_BUILD - "PLINK v1.90b6.3" + "PLINK v1.90b6.4" #else "PLINK v1.90p" #endif @@ -105,10 +105,10 @@ static const char ver_str[] = #else " 32-bit" #endif - " (17 Jul 2018)"; + " (7 Aug 2018)"; static const char ver_str2[] = // include leading space if day < 10, so character length stays the same - "" + " " #ifdef STABLE_BUILD " " // (don't want this when version number has two trailing digits) #else ===================================== plink_assoc.c ===================================== --- a/plink_assoc.c +++ b/plink_assoc.c @@ -5918,6 +5918,8 @@ int32_t model_assoc_set_test(pthread_t* threads, FILE* bedfile, uintptr_t bed_of } goto model_assoc_set_test_perms_done; } + // bugfix (7 Aug 2018): forgot to update marker_unstopped_ct + marker_unstopped_ct = popcount_longs(unstopped_markers, (marker_ct + BITCT - 1) / BITCT); } printf("\r%u permutation%s complete.", perms_done, (perms_done != 1)? "s" : ""); fflush(stdout); View it on GitLab: https://salsa.debian.org/med-team/plink1-9/compare/52649ac487c085f55bfe80056c6e6ccc8f7bc503...e391180333011d111de6b00dac64401b148e704f -- View it on GitLab: https://salsa.debian.org/med-team/plink1-9/compare/52649ac487c085f55bfe80056c6e6ccc8f7bc503...e391180333011d111de6b00dac64401b148e704f You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
