Alexandre Mestiashvili pushed to branch master at Debian Med / gmap
Commits: 370503be by Alexandre Mestiashvili at 2018-08-30T08:49:37Z Add patch from upstream fixing FTBFS when a CPU has only SSE2 - - - - - 7f43693a by Alexandre Mestiashvili at 2018-08-30T08:53:13Z Prepare for release Gbp-Dch: Ignore - - - - - f80721f4 by Alexandre Mestiashvili at 2018-08-31T09:37:36Z Bump Standards-Version to 4.2.1 - - - - - 57f8b4ce by Alexandre Mestiashvili at 2018-08-31T09:39:20Z Fix a typo in sse2 patch description - - - - - ef2a4984 by Alexandre Mestiashvili at 2018-08-31T09:40:14Z d/control: XS-Autobuild: yes - - - - - 46f45d06 by Alexandre Mestiashvili at 2018-08-31T09:41:02Z Update changelog Gbp-Dch: Ignore - - - - - 4 changed files: - debian/changelog - debian/control - debian/patches/series - + debian/patches/sse2.patch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,17 @@ +gmap (2018-07-04-3) unstable; urgency=medium + + * Bump Standards-Version to 4.2.1 + * Fix a typo in sse2 patch description + * d/control: XS-Autobuild: yes + + -- Alexandre Mestiashvili <[email protected]> Fri, 31 Aug 2018 09:40:16 +0000 + +gmap (2018-07-04-2) unstable; urgency=medium + + * Add patch from upstream fixing FTBFS when a CPU has only SSE2 + + -- Alexandre Mestiashvili <[email protected]> Thu, 30 Aug 2018 08:51:09 +0000 + gmap (2018-07-04-1) unstable; urgency=medium [ Steffen Möller ] ===================================== debian/control ===================================== @@ -4,14 +4,14 @@ Uploaders: Shaun Jackman <[email protected]>, Andreas Tille <[email protected]>, Alexandre Mestiashvili <[email protected]> Section: non-free/science -XS-Autobuild: no +XS-Autobuild: yes Priority: optional Build-Depends: debhelper (>= 11~), dh-exec, help2man, libbz2-dev, zlib1g-dev -Standards-Version: 4.1.5 +Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/gmap Vcs-Git: https://salsa.debian.org/med-team/gmap.git Homepage: http://research-pub.gene.com/gmap ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ +sse2.patch only-do-cpuid-on-amd64-i386.patch install-data-local ===================================== debian/patches/sse2.patch ===================================== @@ -0,0 +1,40 @@ +Subject: Apply upstream patch fixing #902820 + FTBFS on stretch/amd64 if CPU has SSE2 and nothing more +From: Thomas Wu <[email protected]> +Forwarded: Yes +--- gmap.orig/src/extension-search.c ++++ gmap/src/extension-search.c +@@ -340,13 +340,6 @@ + + #endif + +-static void +-print_vector_dec (__m128i x) { +- printf("%d %d %d %d\n", +- _mm_extract_epi32(x,0),_mm_extract_epi32(x,1),_mm_extract_epi32(x,2),_mm_extract_epi32(x,3)); +- return; +-} +- + + #if !defined(HAVE_SSE4_2) + #define count_leading_zeroes_32(diff) ((diff >> 16) ? clz_table[diff >> 16] : 16 + clz_table[diff]) +--- gmap.orig/src/kmer-search.c ++++ gmap/src/kmer-search.c +@@ -215,7 +215,8 @@ + /* Algorithm 2: Stage3end_complete_path_run_gmap: complete_path -> hits */ + + +-#ifdef HAVE_SSE2 ++#ifdef DEBUG8 ++#ifdef HAVE_SSE4_1 + static void + print_vector_dec (__m128i x) { + printf("%d %d %d %d\n", +@@ -223,6 +224,7 @@ + return; + } + #endif ++#endif + + + #if !defined(HAVE_SSE4_2) View it on GitLab: https://salsa.debian.org/med-team/gmap/compare/ecd23f0946f6dc8e838221407121f8544ad508f4...46f45d064d6df2eab450cb44fe37494aabd6ab39 -- View it on GitLab: https://salsa.debian.org/med-team/gmap/compare/ecd23f0946f6dc8e838221407121f8544ad508f4...46f45d064d6df2eab450cb44fe37494aabd6ab39 You're receiving this email because of your account on salsa.debian.org.
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