Alexandre Mestiashvili pushed to branch master at Debian Med / falcon
Commits:
26fde659 by Alexandre Mestiashvili at 2018-09-11T09:30:37Z
Update build-system.patch, force installation into build-area, update d/rules
- - - - -
3314f3ac by Alexandre Mestiashvili at 2018-09-11T09:33:28Z
Add python-future to build-depends, run wrap-and-sort
- - - - -
6 changed files:
- debian/control
- debian/copyright
- debian/docs
- debian/install
- debian/patches/build-system.patch
- debian/rules
Changes:
=====================================
debian/control
=====================================
@@ -6,27 +6,27 @@ Priority: optional
Build-Depends: debhelper (>= 11~),
dh-python,
nim,
- rsync,
python-all-dev,
- python-setuptools,
+ python-future,
python-networkx (>= 1.7),
-# Test-Depends:
python-nose,
- python-pytest
+ python-pytest,
+ python-setuptools,
+ rsync
Standards-Version: 4.1.5
Vcs-Browser: https://salsa.debian.org/med-team/falcon
Vcs-Git: https://salsa.debian.org/med-team/falcon.git
Homepage: https://github.com/PacificBiosciences/FALCON
Package: falcon
-Architecture: alpha amd64 kfreebsd-amd64 arm64 hppa mips64el ppc64 ppc64el
s390x sparc64
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- ${python:Depends},
+Architecture: alpha amd64 arm64 hppa kfreebsd-amd64 mips64el ppc64 ppc64el
s390x sparc64
+Depends: python-networkx (>= 1.7),
python-pkg-resources,
- python-networkx (>= 1.7),
rsync,
- time
+ time,
+ ${misc:Depends},
+ ${python:Depends},
+ ${shlibs:Depends}
Description: diploid-aware genome assembly of single-molecule sequencing reads
FALCON is a set of tools for fast aligning long reads for consensus
and assembly. It is a simple code collection for efficient assembly of
=====================================
debian/copyright
=====================================
@@ -115,7 +115,7 @@ License: BSD-3-Clause-EWM
list of conditions and the following disclaimer in the documentation and/or
other materials provided with the distribution.
.
- · The name of EWM may not be used to endorse or promote products derived
from
+ · The name of EWM may not be used to endorse or promote products derived from
this software without specific prior written permission.
.
THIS SOFTWARE IS PROVIDED BY EWM ”AS IS” AND ANY EXPRESS OR IMPLIED
WARRANTIES,
=====================================
debian/docs
=====================================
@@ -0,0 +1 @@
+
=====================================
debian/install
=====================================
@@ -1,2 +1,2 @@
-inst/* /usr/lib/falcon
debian/fc_run /usr/bin
+inst/* /usr/lib/falcon
=====================================
debian/patches/build-system.patch
=====================================
@@ -20,13 +20,13 @@ Last-Update: 2016-11-26
PREFIX=${FALCON_PREFIX} ${MAKE} -C ${FALCON_WORKSPACE}/DEXTRACTOR
${FALCON_INSTALL_RULE}
install-pypeFLOW:
- cd ${FALCON_WORKSPACE}/pypeFLOW; pip uninstall -v .; pip install -v
${FALCON_PIP_USER} ${FALCON_PIP_EDIT} .
-+ cd ${FALCON_WORKSPACE}/pypeFLOW; python setup.py install
${FALCON_PYFLAGS}
++ cd ${FALCON_WORKSPACE}/pypeFLOW; python setup.py install
${FALCON_PYFLAGS} --prefix=${FALCON_PREFIX}
install-FALCON: install-pypeFLOW
- cd ${FALCON_WORKSPACE}/FALCON; pip uninstall -v .; pip install -v
${FALCON_PIP_USER} ${FALCON_PIP_EDIT} .
-+ cd ${FALCON_WORKSPACE}/FALCON; python setup.py install ${FALCON_PYFLAGS}
++ cd ${FALCON_WORKSPACE}/FALCON; python setup.py install
${FALCON_PYFLAGS} --prefix=${FALCON_PREFIX}
install-FALCON_unzip: install-pypeFLOW
- cd ${FALCON_WORKSPACE}/FALCON_unzip; pip uninstall -v .; pip install -v
${FALCON_PIP_USER} ${FALCON_PIP_EDIT} .
-+ cd ${FALCON_WORKSPACE}/FALCON_unzip; python setup.py install
${FALCON_PYFLAGS}
++ cd ${FALCON_WORKSPACE}/FALCON_unzip; python setup.py install
${FALCON_PYFLAGS} --prefix=${FALCON_PREFIX}
install-nim-falcon:
make -C ${FALCON_WORKSPACE}/nim-falcon/src -j1 all
rsync ${FALCON_WORKSPACE}/nim-falcon/src/*.exe ${FALCON_PREFIX}/bin/
=====================================
debian/rules
=====================================
@@ -1,19 +1,19 @@
#!/usr/bin/make -f
-#DH_VERBOSE = 1
-#include /usr/share/dpkg/default.mk
+DH_VERBOSE = 1
+include /usr/share/dpkg/default.mk
export LC_ALL=C.UTF-8
-
export FALCON_WORKSPACE=$(CURDIR)
export FALCON_PREFIX=$(CURDIR)/inst
export FALCON_INSTALL_RULE=install
-
-export PYTHONPATH:=$(FALCON_PREFIX)/pylib:$(PYTHONPATH)
+py2vers = $(shell pyversions -rv)
+export
PYTHONPATH:=$(FALCON_PREFIX)/lib/python${py2vers}/site-packages:$(PYTHONPATH)
%:
dh $@ --with python2
override_dh_auto_build:
+ mkdir $(FALCON_PREFIX)/lib/python${py2vers}/site-packages/ -p
mkdir -p \
$(FALCON_PREFIX)/bin \
$(FALCON_PREFIX)/include \
View it on GitLab:
https://salsa.debian.org/med-team/falcon/compare/d4c737484fff40d47b07614e08ab79ad7947ce6e...3314f3acee45ddcd6e9c77b2c059daaf59a32f5b
--
View it on GitLab:
https://salsa.debian.org/med-team/falcon/compare/d4c737484fff40d47b07614e08ab79ad7947ce6e...3314f3acee45ddcd6e9c77b2c059daaf59a32f5b
You're receiving this email because of your account on salsa.debian.org.
_______________________________________________
debian-med-commit mailing list
[email protected]
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
