Steffen Möller pushed to branch master at Debian Med / python-pysam
Commits:
ccef4ca2 by Steffen Moeller at 2018-09-14T11:32:32Z
Adjustments
- - - - -
9099420a by Steffen Moeller at 2018-09-14T11:32:48Z
Merge branch 'master' of salsa.debian.org:med-team/python-pysam
- - - - -
92ad28b6 by Steffen Moeller at 2018-09-14T12:32:15Z
Merge branch 'master' of salsa.debian.org:med-team/python-pysam
- - - - -
8f48c352 by Steffen Moeller at 2018-09-14T13:04:10Z
Giving up for the moment - something deletes this file
- - - - -
75779a9f by Steffen Moeller at 2018-09-14T20:47:07Z
Team upload - avoiding lintian warning
- - - - -
3 changed files:
- debian/changelog
- debian/patches/series
- debian/patches/skip_test_needing_missing_data.patch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,4 +1,6 @@
-python-pysam (0.15.1+ds-1) UNRELEASED; urgency=medium
+python-pysam (0.15.1+ds-1) unstable; urgency=medium
+
+ * Team upload.
* New upstream version.
- Removes autogenerated config.h - [many thanks!]
=====================================
debian/patches/series
=====================================
@@ -1,2 +1,2 @@
skip_test_remote.patch
-#skip_test_needing_missing_data.patch
+skip_test_needing_missing_data.patch
=====================================
debian/patches/skip_test_needing_missing_data.patch
=====================================
@@ -8,7 +8,7 @@ Index: python-pysam/tests/AlignmentFile_test.py
===================================================================
--- python-pysam.orig/tests/AlignmentFile_test.py
+++ python-pysam/tests/AlignmentFile_test.py
-@@ -1403,12 +1403,7 @@ class TestEmptyHeader(unittest.TestCase)
+@@ -1402,11 +1402,6 @@ class TestEmptyHeader(unittest.TestCase)
'example_empty_header.bam'))
self.assertEqual(s.header.to_dict(), {'SQ': [{'LN': 1000, 'SN':
'chr1'}]})
@@ -16,8 +16,7 @@ Index: python-pysam/tests/AlignmentFile_test.py
- s = pysam.AlignmentFile(os.path.join(BAM_DATADIR,
"example_no_seq_in_header.bam"))
- self.assertTrue("SQ" in s.header.to_dict())
- self.assertTrue("@SQ" in str(s.header))
+-
--
- class TestHeaderWithProgramOptions(unittest.TestCase):
-
- '''see issue 39.'''
+ class TestMismatchingHeader(unittest.TestCase):
+ '''see issue 716.'''
View it on GitLab:
https://salsa.debian.org/med-team/python-pysam/compare/07dd508c5a5c866fbe438fe546c2178ae7762abe...75779a9f8054ec45e17dfdfb637e311333ad9036
--
View it on GitLab:
https://salsa.debian.org/med-team/python-pysam/compare/07dd508c5a5c866fbe438fe546c2178ae7762abe...75779a9f8054ec45e17dfdfb637e311333ad9036
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