Andreas Tille pushed to branch master at Debian Med / libchado-perl
Commits: c29b2b7c by Andreas Tille at 2018-09-27T18:22:27Z debhelper 11 - - - - - 68971f86 by Andreas Tille at 2018-09-27T18:24:44Z Point Vcs fields to salsa.debian.org - - - - - 1259f2f1 by Andreas Tille at 2018-09-27T18:24:44Z Standards-Version: 4.2.1 - - - - - 887ff247 by Andreas Tille at 2018-09-27T18:30:30Z Fix perl interpreter path - - - - - a6aab66c by Andreas Tille at 2018-09-27T18:37:00Z Do not parse d/changelog - - - - - 6e8424cc by Andreas Tille at 2018-09-27T18:49:43Z Fix permissions, Do not include installation docs - - - - - 25205888 by Andreas Tille at 2018-09-27T18:52:07Z Upload to unstable - - - - - 4 changed files: - debian/changelog - debian/compat - debian/control - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,15 @@ +libchado-perl (1.31-5) unstable; urgency=medium + + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.2.1 + * Fix perl interpreter path + * Do not parse d/changelog + * Fix permissions + * Do not include installation docs + + -- Andreas Tille <[email protected]> Thu, 27 Sep 2018 20:49:54 +0200 + libchado-perl (1.31-4) unstable; urgency=medium * Move packaging from SVN to Git ===================================== debian/compat ===================================== @@ -1 +1 @@ -10 +11 ===================================== debian/control ===================================== @@ -6,7 +6,7 @@ Uploaders: Scott Cain <[email protected]>, Andreas Tille <[email protected]> Section: perl Priority: optional -Build-Depends: debhelper (>= 10) +Build-Depends: debhelper (>= 11~) Build-Depends-Indep: perl, libclass-dbi-pg-perl, libxml-libxslt-perl, @@ -29,9 +29,9 @@ Build-Depends-Indep: perl, libsql-translator-perl, libdbix-dbstag-perl, libmodule-build-perl -Standards-Version: 4.1.0 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/libchado-perl.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/libchado-perl.git +Standards-Version: 4.2.1 +Vcs-Browser: https://salsa.debian.org/med-team/libchado-perl +Vcs-Git: https://salsa.debian.org/med-team/libchado-perl.git Homepage: http://gmod.org/wiki/Chado Package: libchado-perl ===================================== debian/rules ===================================== @@ -1,10 +1,10 @@ #!/usr/bin/make -f -pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p') +include /usr/share/dpkg/default.mk #export GMOD_ROOT=/usr/share/gmod/chado -export GMOD_ROOT=$(CURDIR)/debian/$(pkg)/usr/share/gmod/chado -export CHAOS_HOME=$(CURDIR)/debian/$(pkg)/usr/share/gmod/chaos +export GMOD_ROOT=$(CURDIR)/debian/$(DEB_SOURCE)/usr/share/gmod/chado +export CHAOS_HOME=$(CURDIR)/debian/$(DEB_SOURCE)/usr/share/gmod/chaos export CHADO_DB_NAME=gmod-chado export PREFIX=/usr @@ -12,47 +12,61 @@ export PREFIX=/usr dh $@ --buildsystem=perl_makemaker override_dh_auto_configure: - perl Makefile.PL INSTALL_BASE=/usr DBNAME=$(CHADO_DB_NAME) DBUSER=chado DBPASS=chado DBHOST=localhost DBPORT=5432 GMOD_ROOT=$(GMOD_ROOT) DBDRIVER=PostgreSQL RECONFIGURE=1 SIMPLE=Y LOCAL_TMP=$(CURDIR)/debian/$(pkg)/tmp + perl Makefile.PL INSTALL_BASE=/usr DBNAME=$(CHADO_DB_NAME) DBUSER=chado DBPASS=chado DBHOST=localhost DBPORT=5432 GMOD_ROOT=$(GMOD_ROOT) DBDRIVER=PostgreSQL RECONFIGURE=1 SIMPLE=Y LOCAL_TMP=$(CURDIR)/debian/$(DEB_SOURCE)/tmp override_dh_install: dh_install -O--buildsystem=perl_makemaker - rm -f debian/$(pkg)/usr/share/gmod/chado/load/etc/load.conf - sed -i 's/SQLFILE=\/.*\/$(pkg)/SQLFILE=/' debian/$(pkg)/usr/share/gmod/chado/conf/gmod-chado.conf - sed -i 's/TMP=\/.*\/tmp/CONF=\/tmp/' debian/$(pkg)/usr/share/gmod/chado/conf/gmod.conf - sed -i 's/CONF=.*\/conf/CONF=\/etc\/gmod/' debian/$(pkg)/usr/share/gmod/chado/conf/gmod.conf - mv $(GMOD_ROOT)/conf/* debian/$(pkg)/etc/gmod/ + rm -f debian/$(DEB_SOURCE)/usr/share/gmod/chado/load/etc/load.conf + sed -i 's/SQLFILE=\/.*\/$(DEB_SOURCE)/SQLFILE=/' debian/$(DEB_SOURCE)/usr/share/gmod/chado/conf/gmod-chado.conf + sed -i 's/TMP=\/.*\/tmp/CONF=\/tmp/' debian/$(DEB_SOURCE)/usr/share/gmod/chado/conf/gmod.conf + sed -i 's/CONF=.*\/conf/CONF=\/etc\/gmod/' debian/$(DEB_SOURCE)/usr/share/gmod/chado/conf/gmod.conf + mv $(GMOD_ROOT)/conf/* debian/$(DEB_SOURCE)/etc/gmod/ # Give exexution rights to perl scripts - find debian/$(pkg)/ -name *.pl | xargs chmod 755 - find debian/$(pkg)/ -name *.tmpl | xargs chmod 644 - find debian/$(pkg)/ -name *.pm | xargs chmod 644 - find debian/$(pkg)/ -name *.pod | xargs rm -f - find debian/$(pkg)/ -name .packlist | xargs rm -f - find debian/$(pkg)/ -name "*.sql" | xargs chmod a-x - chmod 755 debian/$(pkg)/usr/share/gmod/chado/soi/t/t_soi_parse_intersect - chmod 755 debian/$(pkg)/usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl - mv debian/tmp/usr/bin/test* debian/$(pkg)/usr/share/gmod/chado/bin/ - mv debian/tmp/usr/bin/gmod_chado* debian/$(pkg)/usr/share/gmod/chado/bin/ - mv debian/tmp/usr/bin/config* debian/$(pkg)/usr/share/gmod/chado/bin/ - mv debian/tmp/usr/bin/Auto* debian/$(pkg)/usr/share/gmod/chado/bin/ + find debian/$(DEB_SOURCE)/ -name *.pl | xargs chmod 755 + find debian/$(DEB_SOURCE)/ -name *.tmpl | xargs chmod 644 + find debian/$(DEB_SOURCE)/ -name *.pm | xargs chmod 644 + find debian/$(DEB_SOURCE)/ -name *.pod | xargs rm -f + find debian/$(DEB_SOURCE)/ -name .packlist | xargs rm -f + find debian/$(DEB_SOURCE)/ -name "*.sql" | xargs chmod a-x + chmod 755 debian/$(DEB_SOURCE)/usr/share/gmod/chado/soi/t/t_soi_parse_intersect + chmod 755 debian/$(DEB_SOURCE)/usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl + mv debian/tmp/usr/bin/test* debian/$(DEB_SOURCE)/usr/share/gmod/chado/bin/ + mv debian/tmp/usr/bin/gmod_chado* debian/$(DEB_SOURCE)/usr/share/gmod/chado/bin/ + mv debian/tmp/usr/bin/config* debian/$(DEB_SOURCE)/usr/share/gmod/chado/bin/ + mv debian/tmp/usr/bin/Auto* debian/$(DEB_SOURCE)/usr/share/gmod/chado/bin/ mv debian/tmp/usr/bin/* debian/chado-utils/usr/share/gmod/chado/bin/ - mv debian/tmp/usr/lib/perl5/* debian/$(pkg)/usr/share/perl5/ - rm -rf debian/$(pkg)/usr/lib/perl5 - mv debian/tmp/usr/man/man3 debian/$(pkg)/usr/share/man + mv debian/tmp/usr/lib/perl5/* debian/$(DEB_SOURCE)/usr/share/perl5/ + rm -rf debian/$(DEB_SOURCE)/usr/lib/perl5 + mv debian/tmp/usr/man/man3 debian/$(DEB_SOURCE)/usr/share/man mv debian/tmp/usr/man/man1 debian/chado-utils/usr/share/man - cp debian/testdb.pl debian/$(pkg)/usr/share/gmod/chado/bin/ - rm -rf debian/$(pkg)/usr/share/perl5/x86_64-linux-gnu-thread-multi + cp debian/testdb.pl debian/$(DEB_SOURCE)/usr/share/gmod/chado/bin/ + rm -rf debian/$(DEB_SOURCE)/usr/share/perl5/x86_64-linux-gnu-thread-multi # Needed for runtime configure - rm -rf debian/$(pkg)/usr/share/gmod/chado/lib - rm -rf debian/$(pkg)/usr/bin - rm -rf debian/$(pkg)/usr/lib - rm -rf debian/$(pkg)/usr/share/gmod/chado/load/logs - rm -rf debian/$(pkg)/usr/share/gmod/chado/tmp + rm -rf debian/$(DEB_SOURCE)/usr/share/gmod/chado/lib + rm -rf debian/$(DEB_SOURCE)/usr/bin + rm -rf debian/$(DEB_SOURCE)/usr/lib + rm -rf debian/$(DEB_SOURCE)/usr/share/gmod/chado/load/logs + rm -rf debian/$(DEB_SOURCE)/usr/share/gmod/chado/tmp # Remove not required man pages for user (also contains pod2man errors and missing what-is) - rm -rf debian/$(pkg)/usr/share/man + rm -rf debian/$(DEB_SOURCE)/usr/share/man + # Fix perl interpreter path + for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ + sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \ + done + +override_dh_installdocs: + dh_installdocs + # remove installation doc + find debian -name "INSTALL.Chado*" -delete override_dh_auto_test: echo "Skipping tests to avoid db access" override_dh_fixperms: dh_fixperms - chmod 644 debian/$(pkg)/etc/gmod/gmod-chado.conf + chmod 644 debian/$(DEB_SOURCE)/etc/gmod/gmod-chado.conf + find debian -name create_so_bridge_command -exec chmod 644 \{\} \; + find debian -name Skip_tables.pm -exec chmod 644 \{\} \; + find debian -name "*.tt2" -exec chmod 644 \{\} \; + find debian -name "*.tmpl" -exec chmod 644 \{\} \; + \ No newline at end of file View it on GitLab: https://salsa.debian.org/med-team/libchado-perl/compare/18741b375174d13c616621706a0904f80d5fbb91...25205888724bd4aa8a39844b68f6d07ad21bfcc8 -- View it on GitLab: https://salsa.debian.org/med-team/libchado-perl/compare/18741b375174d13c616621706a0904f80d5fbb91...25205888724bd4aa8a39844b68f6d07ad21bfcc8 You're receiving this email because of your account on salsa.debian.org.
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