Sascha Steinbiss pushed to branch master at Debian Med / ariba
Commits:
4d6c0399 by Sascha Steinbiss at 2019-01-05T10:34:29Z
New upstream version 2.13.3+ds
- - - - -
7ae3300a by Sascha Steinbiss at 2019-01-05T10:34:39Z
Merge tag 'upstream/2.13.3+ds'
Upstream version 2.13.3+ds
- - - - -
c19bd830 by Sascha Steinbiss at 2019-01-05T10:35:10Z
new upstream release
- - - - -
5 changed files:
- ariba/tb.py
- + ariba/tb_data/panel.20190102.json
- + ariba/tb_data/panel.20190102.txt
- debian/changelog
- setup.py
Changes:
=====================================
ariba/tb.py
=====================================
@@ -212,8 +212,8 @@ def write_prepareref_metadata_file(mutations, outfile):
def make_prepareref_files(outprefix):
genbank_file = os.path.join(data_dir, 'NC_000962.3.gb')
- mut_to_drug_json = os.path.join(data_dir, 'panel.20181221.json')
- panel_txt_file = os.path.join(data_dir, 'panel.20181221.txt')
+ mut_to_drug_json = os.path.join(data_dir, 'panel.20190102.json')
+ panel_txt_file = os.path.join(data_dir, 'panel.20190102.txt')
fasta_out = outprefix + '.fa'
tsv_out = outprefix + '.tsv'
=====================================
ariba/tb_data/panel.20190102.json
=====================================
The diff for this file was not included because it is too large.
=====================================
ariba/tb_data/panel.20190102.txt
=====================================
The diff for this file was not included because it is too large.
=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+ariba (2.13.3+ds-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Sascha Steinbiss <[email protected]> Sat, 05 Jan 2019 10:34:41 +0000
+
ariba (2.13.2+ds-1) unstable; urgency=medium
* New upstream release.
=====================================
setup.py
=====================================
@@ -55,7 +55,7 @@ vcfcall_mod = Extension(
setup(
ext_modules=[minimap_mod, fermilite_mod, vcfcall_mod],
name='ariba',
- version='2.13.2',
+ version='2.13.3',
description='ARIBA: Antibiotic Resistance Identification By Assembly',
packages = find_packages(),
package_data={'ariba': ['test_run_data/*', 'tb_data/*']},
View it on GitLab:
https://salsa.debian.org/med-team/ariba/compare/9e9d96b594f4a2a85f82cc3f0e82fea52fde1e99...c19bd8301e626ae122eebb26be31c9d3d4cb64d9
--
View it on GitLab:
https://salsa.debian.org/med-team/ariba/compare/9e9d96b594f4a2a85f82cc3f0e82fea52fde1e99...c19bd8301e626ae122eebb26be31c9d3d4cb64d9
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