Olivier Sallou pushed to branch master at Debian Med / picard-tools
Commits: ebc5863a by Olivier Sallou at 2019-01-25T10:43:57Z New upstream version 2.18.25+dfsg - - - - - a71b8f3a by Olivier Sallou at 2019-01-25T10:44:29Z Update upstream source from tag 'upstream/2.18.25+dfsg' Update to upstream version '2.18.25+dfsg' with Debian dir feee292f8bde481c7419dce2b4e49da22575b77b - - - - - 20608c86 by Olivier Sallou at 2019-01-25T10:47:14Z new upstream release 2.18.25 - - - - - 96674a54 by Olivier Sallou at 2019-01-25T10:47:57Z refresh patches for fuzz - - - - - 13b391f5 by Olivier Sallou at 2019-01-25T10:48:34Z upload v2.18.25 - - - - - cf962220 by Olivier Sallou at 2019-01-25T10:49:03Z fix version - - - - - 30 changed files: - Dockerfile - build.gradle - debian/changelog - debian/control - debian/patches/20-shadowjar.patch - debian/patches/fix_unreadabletests.patch - + src/main/java/picard/sam/AddOATag.java - src/main/java/picard/sam/markduplicates/MarkDuplicates.java - src/main/java/picard/sam/markduplicates/util/AbstractMarkDuplicatesCommandLineProgram.java - src/main/java/picard/sam/markduplicates/util/LibraryIdGenerator.java - src/main/java/picard/sam/markduplicates/util/OpticalDuplicateFinder.java - src/main/java/picard/sam/util/PGTagArgumentCollection.java - src/main/java/picard/util/LiftoverUtils.java - src/main/java/picard/vcf/LiftoverVcf.java - + src/test/java/picard/sam/AddOATagTest.java - src/test/java/picard/sam/CompareSAMsTest.java - src/test/java/picard/sam/ValidateSamFileTest.java - src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTester.java - + src/test/java/picard/sam/markduplicates/MarkDuplicatesSetSizeHistogramTest.java - + src/test/java/picard/sam/markduplicates/MarkDuplicatesSetSizeHistogramTester.java - src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTester.java - src/test/java/picard/sam/markduplicates/util/OpticalDuplicateFinderTest.java - src/test/java/picard/sam/testers/SamFileTester.java - src/test/java/picard/util/LiftoverVcfTest.java - src/test/java/picard/vcf/VcfTestUtils.java - testdata/picard/analysis/directed/CollectHsMetrics/chrM.interval_list - testdata/picard/analysis/directed/CollectHsMetrics/lowbaseq.sam - testdata/picard/analysis/directed/CollectHsMetrics/lowmapq.sam - testdata/picard/analysis/directed/CollectHsMetrics/overlapping.sam - testdata/picard/analysis/directed/CollectHsMetrics/single-short-read.sam The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/compare/b5887cee88ee8a326fa4ce0ff35be89d661cd5bd...cf962220447ec2f4960a339f1de26a25839b3fef -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/compare/b5887cee88ee8a326fa4ce0ff35be89d661cd5bd...cf962220447ec2f4960a339f1de26a25839b3fef You're receiving this email because of your account on salsa.debian.org.
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