Olivier Sallou pushed to branch upstream at Debian Med / picard-tools
Commits: ebc5863a by Olivier Sallou at 2019-01-25T10:43:57Z New upstream version 2.18.25+dfsg - - - - - 30 changed files: - Dockerfile - build.gradle - + src/main/java/picard/sam/AddOATag.java - src/main/java/picard/sam/markduplicates/MarkDuplicates.java - src/main/java/picard/sam/markduplicates/util/AbstractMarkDuplicatesCommandLineProgram.java - src/main/java/picard/sam/markduplicates/util/LibraryIdGenerator.java - src/main/java/picard/sam/markduplicates/util/OpticalDuplicateFinder.java - src/main/java/picard/sam/util/PGTagArgumentCollection.java - src/main/java/picard/util/LiftoverUtils.java - src/main/java/picard/vcf/LiftoverVcf.java - + src/test/java/picard/sam/AddOATagTest.java - src/test/java/picard/sam/CompareSAMsTest.java - src/test/java/picard/sam/ValidateSamFileTest.java - src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTester.java - + src/test/java/picard/sam/markduplicates/MarkDuplicatesSetSizeHistogramTest.java - + src/test/java/picard/sam/markduplicates/MarkDuplicatesSetSizeHistogramTester.java - src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTester.java - src/test/java/picard/sam/markduplicates/util/OpticalDuplicateFinderTest.java - src/test/java/picard/sam/testers/SamFileTester.java - src/test/java/picard/util/LiftoverVcfTest.java - src/test/java/picard/vcf/VcfTestUtils.java - testdata/picard/analysis/directed/CollectHsMetrics/chrM.interval_list - testdata/picard/analysis/directed/CollectHsMetrics/lowbaseq.sam - testdata/picard/analysis/directed/CollectHsMetrics/lowmapq.sam - testdata/picard/analysis/directed/CollectHsMetrics/overlapping.sam - testdata/picard/analysis/directed/CollectHsMetrics/single-short-read.sam - testdata/picard/analysis/directed/CollectHsMetrics/two-small.interval_list - testdata/picard/fingerprint/reference.dict - testdata/picard/illumina/151T8B8B151T_cbcl/sams/1102.CACCTAGTACTCGAGT.sam - testdata/picard/illumina/151T8B8B151T_cbcl/sams/1102.CCCCGCTTTTGCGTGT.sam The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/commit/ebc5863a824a4ddb1e24754f070e6d109a2c22e5 -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/commit/ebc5863a824a4ddb1e24754f070e6d109a2c22e5 You're receiving this email because of your account on salsa.debian.org.
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