Alexandre Mestiashvili pushed to branch master at Debian Med / subread
Commits: 17088b4b by Alexandre Mestiashvili at 2019-01-30T18:54:39Z Don't install buggy detectionCall binary - - - - - d7f4e6bf by Alexandre Mestiashvili at 2019-01-30T19:03:54Z Update d/README.Debian - - - - - 0c38a9c5 by Alexandre Mestiashvili at 2019-01-30T19:21:36Z Update d/chaneglog Gbp-Dch: Ignore - - - - - 4 changed files: - debian/README.Debian - debian/changelog - debian/rules - debian/subread.install Changes: ===================================== debian/README.Debian ===================================== @@ -12,4 +12,9 @@ Subread User Guide can be found on the project's web site: http://bioinf.wehi.edu.au/subread-package/SubreadUsersGuide.pdf --- Alex Mestiashvili <[email protected]> Thu, 07 May 2015 15:24:57 +0200 +Subread 1.6.3 changes: + detectionCall binary is excluded from 1.6.3+dfsg-1 package due to it's + bugginess. The issue is submited to the upstream and hopefully will + be resolved in the next releases. + +-- Alex Mestiashvili <[email protected]> Thu, 07 May 2015 15:24:57 +0200 ===================================== debian/changelog ===================================== @@ -1,18 +1,17 @@ -subread (1.6.3+dfsg-1) UNRELEASED; urgency=medium +subread (1.6.3+dfsg-1) unstable; urgency=medium [ Alexandre Mestiashvili ] * New upstream version 1.6.3+dfsg * DH_VERBOSE=1, check for nocheck in DEB_BUILD_OPTIONS * Bump Policy to 4.3.0 * Refresh patches - * New binary detectionCall segfaults, - remove dropped by upstream coverageCount - * TODO: waiting for answer from upstream regarding segfault on derectionCall + * Don't install buggy detectionCall binary + * Update d/README.Debian [ Andreas Tille ] * debhelper 12 - -- Alexandre Mestiashvili <[email protected]> Thu, 11 Oct 2018 12:33:55 +0000 + -- Alexandre Mestiashvili <[email protected]> Wed, 30 Jan 2019 20:19:47 +0100 subread (1.6.2+dfsg-1) unstable; urgency=medium ===================================== debian/rules ===================================== @@ -72,8 +72,8 @@ DNA-seq reads and RNA-seq reads (for the purpose of expression analysis)' \ # $(HELP2MAN) --name='counting the coverage of mapped reads at each location on the entire reference genome' \ # $(utildir)/coverageCount | debian/filter.pl > $(mandir)/coverageCount.1; - $(HELP2MAN) --name='detectionCall' \ - $(utildir)/detectionCall | debian/filter.pl > $(mandir)/detectionCall.1; +# $(HELP2MAN) --name='detectionCall' \ +# $(utildir)/detectionCall | debian/filter.pl > $(mandir)/detectionCall.1; $(HELP2MAN) --name='calculate the proportion of mapped reads/fragments' \ $(utildir)/propmapped | debian/filter.pl > $(mandir)/propmapped.1; ===================================== debian/subread.install ===================================== @@ -5,7 +5,6 @@ bin/subjunc usr/bin bin/sublong usr/bin bin/subread-align usr/bin bin/subread-buildindex usr/bin -bin/utilities/detectionCall usr/lib/subread bin/utilities/propmapped usr/lib/subread bin/utilities/qualityScores usr/lib/subread bin/utilities/removeDup usr/lib/subread View it on GitLab: https://salsa.debian.org/med-team/subread/compare/21f35b1322a16a3a7753450c8cf3a1979b41caf9...0c38a9c56ad2af07803b2fb1e02162ffd84471e2 -- View it on GitLab: https://salsa.debian.org/med-team/subread/compare/21f35b1322a16a3a7753450c8cf3a1979b41caf9...0c38a9c56ad2af07803b2fb1e02162ffd84471e2 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
