Steffen Möller pushed to branch master at Debian Med / hisat2
Commits: 8c33f705 by Steffen Moeller at 2019-04-17T22:55:00Z Extending support for Python files of hisat2 bcbio needs them to build-testing - - - - - 3 changed files: - debian/changelog - debian/control - debian/install → debian/hisat2.install Changes: ===================================== debian/changelog ===================================== @@ -2,6 +2,11 @@ hisat2 (2.1.0-3) UNRELEASED; urgency=medium * Install hisat2_extract_splice_sites.py + [ Steffen Moeller ] + + * Separated series of .py scripts and modules into separate + python3-hisat2 package. + -- Andreas Tille <[email protected]> Mon, 25 Mar 2019 11:35:33 +0100 hisat2 (2.1.0-2) unstable; urgency=medium ===================================== debian/control ===================================== @@ -16,8 +16,8 @@ Package: hisat2 Architecture: amd64 kfreebsd-amd64 Depends: ${shlibs:Depends}, ${misc:Depends}, - ${perl:Depends}, - python + ${perl:Depends} +Recommends: python3-hisat2 Description: graph-based alignment of short nucleotide reads to many genomes HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well @@ -30,3 +30,24 @@ Description: graph-based alignment of short nucleotide reads to many genomes indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM). + +Package: python3-hisat2 +Architecture: all +Depends: ${misc:Depends}, + hisat2, + python +Description: Python scripts accompanying hisat2 + HISAT2 is a fast and sensitive alignment program for mapping next-generation + sequencing reads (both DNA and RNA) to a population of human genomes (as well + as against a single reference genome). Based on an extension of BWT for graphs + a graph FM index (GFM) was designed and implementd. In addition to using + one global GFM index that represents a population of human genomes, HISAT2 + uses a large set of small GFM indexes that collectively cover the whole genome + (each index representing a genomic region of 56 Kbp, with 55,000 indexes + needed to cover the human population). These small indexes (called local + indexes), combined with several alignment strategies, enable rapid and + accurate alignment of sequencing reads. This new indexing scheme is called a + Hierarchical Graph FM index (HGFM). + . + This package provides a serires of platform-independent scripts that are typically + expected to be co-installed with the hisat2 binary. ===================================== debian/install → debian/hisat2.install ===================================== @@ -1,5 +1,4 @@ hisat2 /usr/bin/ -hisat2_extract_splice_sites /usr/bin hisat2-build /usr/bin/ hisat2-build-s /usr/bin/ hisat2-build-l /usr/bin/ View it on GitLab: https://salsa.debian.org/med-team/hisat2/commit/8c33f70533310cf602c9028e42994a262987a36a -- View it on GitLab: https://salsa.debian.org/med-team/hisat2/commit/8c33f70533310cf602c9028e42994a262987a36a You're receiving this email because of your account on salsa.debian.org.
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