Steffen Möller pushed to branch master at Debian Med / bcbio
Commits: 86cdb51c by Steffen Möller at 2019-06-03T16:25:32Z Update of d/TODO, d/control - - - - - 2 changed files: - debian/TODO - debian/control Changes: ===================================== debian/TODO ===================================== @@ -29,7 +29,21 @@ package optitype package pyomo https://github.com/Pyomo/pyomo - needed by optitype + https://salsa.debian.org/python-team/applications/pyomo - builds locally (Steffen does not have upload privileges, some tests fail) + needed by optitype + +package pyutilib + https://github.com/PyUtilib/pyutilib + https://salsa.debian.org/python-team/modules/pyutilib - builds, tests fail + needed by pyomo for testing + +package gjh_asl_json + https://github.com/ghackebeil/gjh_asl_json + needed by pyomo for testing + +package "asl solver" + http://www.ampl.com/netlib/ampl/solvers.tgz + needed by gjh_asl_json package vcfanno https://salsa.debian.org/med-team/vcfanno @@ -65,14 +79,15 @@ package Python module geneimpacts https://salsa.debian.org/med-team/python-geneimpacts (in new queue) package seqcluster -https://github.com/lpantano/seqcluster/archive/1824d37.tar.gz + https://github.com/lpantano/seqcluster/archive/1824d37.tar.gz package pizzly -https://github.com/pmelsted/pizzly -including pizzly_flatten_json.py + https://github.com/pmelsted/pizzly + including pizzly_flatten_json.py + Steffen has a look package vt -https://github.com/atks/vt + https://github.com/atks/vt package fgbio https://github.com/fulcrumgenomics/fgbio ===================================== debian/control ===================================== @@ -90,6 +90,7 @@ Recommends: bcftools, grabix, libvcflib-tools, macs, + python3-geneimpacts, python3-h5py, pythonpy, rna-star, View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/86cdb51ceb37ac51305573d5382165c295f33541 -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/86cdb51ceb37ac51305573d5382165c295f33541 You're receiving this email because of your account on salsa.debian.org.
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