Sascha Steinbiss pushed to branch master at Debian Med / roary
Commits: 5c5a8b4a by Sascha Steinbiss at 2019-06-08T10:21:39Z support Bioperl >= 1.7.4 - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/new-bioperl-require.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +roary (3.12.0+dfsg-3) unstable; urgency=medium + + * Fix support for BioPerl 1.7.4 package currently in unstable. + + -- Sascha Steinbiss <[email protected]> Sat, 08 Jun 2019 11:52:37 +0200 + roary (3.12.0+dfsg-2) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -6,7 +6,7 @@ Priority: optional Build-Depends: debhelper (>= 11~), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, - bioperl, + bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, @@ -44,7 +44,7 @@ Package: roary Architecture: all Depends: ${perl:Depends}, ${misc:Depends}, - bioperl, + bioperl (>= 1.7.4), libarray-utils-perl, libdigest-md5-file-perl, libenv-path-perl, ===================================== debian/patches/new-bioperl-require.patch ===================================== @@ -0,0 +1,14 @@ +Description: use new-style BioPerl include +Author: Sascha Steinbiss <[email protected]> +Last-Update: 2019-06-08 +--- a/lib/Bio/Roary.pm ++++ b/lib/Bio/Roary.pm +@@ -10,7 +10,7 @@ + + use Moose; + use File::Copy; +-use Bio::Perl; ++use BioPerl; + use Bio::Roary::ParallelAllAgainstAllBlast; + use Bio::Roary::CombinedProteome; + use Bio::Roary::External::Cdhit; ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ rename_R_script.patch use-dz-starter.patch use-debian-perl-path.patch +new-bioperl-require.patch View it on GitLab: https://salsa.debian.org/med-team/roary/commit/5c5a8b4ad7085f4574a183fdb2f66aef0f2027bb -- View it on GitLab: https://salsa.debian.org/med-team/roary/commit/5c5a8b4ad7085f4574a183fdb2f66aef0f2027bb You're receiving this email because of your account on salsa.debian.org.
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