Andreas Tille pushed to branch master at Debian Med / spoa
Commits: a419d24f by Andreas Tille at 2019-07-15T13:16:23Z Versioned Build-Depends: libbioparser-dev (>= 2.0) - - - - - b171811d by Andreas Tille at 2019-07-15T14:10:39Z Bump soversion to 3 - - - - - 4b50f7d0 by Andreas Tille at 2019-07-15T14:28:13Z dh_makeshlibs diff - - - - - 9be03132 by Andreas Tille at 2019-07-15T14:30:42Z Upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - debian/libspoa1.1.5.symbols → debian/libspoa3.symbols - debian/patches/fix_soversion.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,11 +1,11 @@ -spoa (3.0.0-1) UNRELEASED; urgency=medium +spoa (3.0.0-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.4.0 - TODO: Newer version of libbioparser-dev (see - https://github.com/rvaser/bioparser/issues/4 ) + * Versioned Build-Depends: libbioparser-dev (>= 2.0) + * Bump soversion to 3 - -- Andreas Tille <[email protected]> Fri, 12 Jul 2019 21:06:20 +0200 + -- Andreas Tille <[email protected]> Mon, 15 Jul 2019 16:12:17 +0200 spoa (1.1.5-1) unstable; urgency=medium ===================================== debian/control ===================================== @@ -7,7 +7,7 @@ Build-Depends: debhelper (>= 12~), cmake, d-shlibs, rename, - libbioparser-dev, + libbioparser-dev (>= 2.0), libgtest-dev, zlib1g-dev Standards-Version: 4.4.0 @@ -27,7 +27,7 @@ Description: SIMD partial order alignment tool (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap). -Package: libspoa1.1.5 +Package: libspoa3 Architecture: amd64 Section: libs Depends: ${shlibs:Depends}, @@ -47,7 +47,7 @@ Architecture: amd64 Section: libdevel Depends: ${shlibs:Depends}, ${misc:Depends}, - libspoa1.1.5 (= ${binary:Version}) + libspoa3 (= ${binary:Version}) Description: SIMD partial order alignment library (development files) Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which ===================================== debian/libspoa1.1.5.symbols → debian/libspoa3.symbols ===================================== @@ -1,29 +1,33 @@ -libspoa.so.1.1.5 libspoa1.1.5 #MINVER# +libspoa.so.3 libspoa3 #MINVER# _ZN4spoa11createGraphEv@Base 1.1.3 - _ZN4spoa15AlignmentEngine25align_sequence_with_graphERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt10unique_ptrINS_5GraphESt14default_deleteISA_EE@Base 1.1.3 - _ZN4spoa15AlignmentEngineC1ENS_13AlignmentTypeEaaa@Base 1.1.3 - _ZN4spoa15AlignmentEngineC2ENS_13AlignmentTypeEaaa@Base 1.1.3 - _ZN4spoa19SimdAlignmentEngine25align_sequence_with_graphEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 1.1.3 + _ZN4spoa15AlignmentEngine5alignERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt10unique_ptrINS_5GraphESt14default_deleteISA_EE@Base 3.0.0 + _ZN4spoa15AlignmentEngineC1ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 + _ZN4spoa15AlignmentEngineC2ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 + _ZN4spoa19SimdAlignmentEngine5alignEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 3.0.0 _ZN4spoa19SimdAlignmentEngine7reallocEjjj@Base 1.1.3 _ZN4spoa19SimdAlignmentEngine8preallocEjj@Base 1.1.3 - _ZN4spoa19SimdAlignmentEngineC1ENS_13AlignmentTypeEaaa@Base 1.1.3 - _ZN4spoa19SimdAlignmentEngineC2ENS_13AlignmentTypeEaaa@Base 1.1.3 + _ZN4spoa19SimdAlignmentEngineC1ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 + _ZN4spoa19SimdAlignmentEngineC2ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 _ZN4spoa19SimdAlignmentEngineD0Ev@Base 1.1.3 _ZN4spoa19SimdAlignmentEngineD1Ev@Base 1.1.3 _ZN4spoa19SimdAlignmentEngineD2Ev@Base 1.1.3 _ZN4spoa19SisdAlignmentEngine10initializeEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 1.1.3 - _ZN4spoa19SisdAlignmentEngine25align_sequence_with_graphEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 1.1.3 _ZN4spoa19SisdAlignmentEngine5alignEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 1.1.3 + _ZN4spoa19SisdAlignmentEngine6affineEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 3.0.0 + _ZN4spoa19SisdAlignmentEngine6convexEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 3.0.0 + _ZN4spoa19SisdAlignmentEngine6linearEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 3.0.0 _ZN4spoa19SisdAlignmentEngine7reallocEjjj@Base 1.1.3 _ZN4spoa19SisdAlignmentEngine8preallocEjj@Base 1.1.3 - _ZN4spoa19SisdAlignmentEngineC1ENS_13AlignmentTypeEaaa@Base 1.1.3 - _ZN4spoa19SisdAlignmentEngineC2ENS_13AlignmentTypeEaaa@Base 1.1.3 + _ZN4spoa19SisdAlignmentEngineC1ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 + _ZN4spoa19SisdAlignmentEngineC2ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 _ZN4spoa19SisdAlignmentEngineD0Ev@Base 1.1.3 _ZN4spoa19SisdAlignmentEngineD1Ev@Base 1.1.3 _ZN4spoa19SisdAlignmentEngineD2Ev@Base 1.1.3 _ZN4spoa21createAlignmentEngineENS_13AlignmentTypeEaaa@Base 1.1.3 - _ZN4spoa25createSimdAlignmentEngineENS_13AlignmentTypeEaaa@Base 1.1.3 - _ZN4spoa25createSisdAlignmentEngineENS_13AlignmentTypeEaaa@Base 1.1.3 + _ZN4spoa21createAlignmentEngineENS_13AlignmentTypeEaaaa@Base 3.0.0 + _ZN4spoa21createAlignmentEngineENS_13AlignmentTypeEaaaaaa@Base 3.0.0 + _ZN4spoa25createSimdAlignmentEngineENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 + _ZN4spoa25createSisdAlignmentEngineENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 _ZN4spoa4Edge12add_sequenceEjj@Base 1.1.3 _ZN4spoa4EdgeC1Ejjjj@Base 1.1.3 _ZN4spoa4EdgeC2Ejjjj@Base 1.1.3 @@ -48,6 +52,7 @@ libspoa.so.1.1.5 libspoa1.1.5 #MINVER# _ZN4spoa5Graph18generate_consensusB5cxx11Ev@Base 1.1.3 _ZN4spoa5Graph24traverse_heaviest_bundleEv@Base 1.1.3 _ZN4spoa5Graph36generate_multiple_sequence_alignmentERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEb@Base 1.1.3 + _ZN4spoa5Graph5clearEv@Base 3.0.0 _ZN4spoa5Graph8add_edgeEjjj@Base 1.1.3 _ZN4spoa5Graph8add_nodeEj@Base 1.1.3 _ZN4spoa5GraphC1Ev@Base 1.1.3 @@ -82,7 +87,9 @@ libspoa.so.1.1.5 libspoa1.1.5 #MINVER# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 _ZNSt6vectorISt10shared_ptrIN4spoa4EdgeEESaIS3_EE17_M_realloc_insertIJRS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.1.3 _ZNSt6vectorISt10unique_ptrIN4spoa4NodeESt14default_deleteIS2_EESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 - _ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJjjEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.3 + _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 3.0.0 + _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0 + _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0 _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 1.1.3 _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3 _ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_@Base 1.1.3 ===================================== debian/patches/fix_soversion.patch ===================================== @@ -6,12 +6,10 @@ Bug-Upstream: https://github.com/rvaser/spoa/issues/14 --- a/CMakeLists.txt +++ b/CMakeLists.txt -@@ -41,7 +41,7 @@ target_include_directories(spoa_static P - set_target_properties(spoa - PROPERTIES - VERSION ${spoa_VERSION} -- SOVERSION ${spoa_VERSION}) -+ SOVERSION 2) +@@ -1,5 +1,5 @@ + cmake_minimum_required(VERSION 3.2) +-project(spoa LANGUAGES CXX VERSION 3.0.0) ++project(spoa LANGUAGES CXX VERSION 3) + + include(GNUInstallDirs) - install(TARGETS spoa DESTINATION ${CMAKE_INSTALL_LIBDIR}) - install(TARGETS spoa_static DESTINATION ${CMAKE_INSTALL_LIBDIR}) ===================================== debian/patches/series ===================================== @@ -1,3 +1,3 @@ use_debian_packaged_libs.patch shared_and_static.patch -# fix_soversion.patch +fix_soversion.patch View it on GitLab: https://salsa.debian.org/med-team/spoa/compare/e7c4827bc15d638b456337d2ccf288381a0036cb...9be03132f39ff0719ca7fc002e8bd1ecddcb7416 -- View it on GitLab: https://salsa.debian.org/med-team/spoa/compare/e7c4827bc15d638b456337d2ccf288381a0036cb...9be03132f39ff0719ca7fc002e8bd1ecddcb7416 You're receiving this email because of your account on salsa.debian.org.
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