Andreas Tille pushed to branch master at Debian Med / proteinortho
Commits: b1cfba15 by Andreas Tille at 2019-07-15T12:57:06Z Fix docs and examples - - - - - 0f915eb8 by Andreas Tille at 2019-07-15T13:04:07Z Fix permissions - - - - - 971da6ba by Andreas Tille at 2019-07-15T13:07:52Z Provide unversioned Link to binary - - - - - 91cde906 by Andreas Tille at 2019-07-15T14:31:19Z Fix autopkgtest - - - - - 1e3a8b8e by Andreas Tille at 2019-07-15T14:33:53Z Upload to unstable - - - - - 6 changed files: - debian/changelog - debian/docs - debian/examples - + debian/links - debian/rules - debian/tests/run-unit-test Changes: ===================================== debian/changelog ===================================== @@ -1,7 +1,6 @@ -proteinortho (6.0.6+dfsg-1) UNRELEASED; urgency=medium +proteinortho (6.0.6+dfsg-1) unstable; urgency=medium [ Paul Klemm ] - * Team upload. * New upstream version [ Andreas Tille ] @@ -9,8 +8,11 @@ proteinortho (6.0.6+dfsg-1) UNRELEASED; urgency=medium * debhelper 12 * Standards-Version: 4.4.0 * Build-Depends: s/liblapack3/liblapack-dev|libatlas-base-dev|liblapack.so/ + * Fix permissions + * Provide unversioned Link to binary + * Fix autopkgtest - -- Paul Klemm <[email protected]> Mon, 15 Jul 2019 13:17:13 +0200 + -- Andreas Tille <[email protected]> Mon, 15 Jul 2019 16:31:25 +0200 proteinortho (5.16.b+dfsg-1) unstable; urgency=medium ===================================== debian/docs ===================================== @@ -1,3 +1,2 @@ debian/README.test debian/tests/run-unit-test -tools ===================================== debian/examples ===================================== @@ -1,3 +1,3 @@ test/*.faa test/*.gff -chk_test.pl +src/chk_test.pl ===================================== debian/links ===================================== @@ -0,0 +1,2 @@ +usr/bin/proteinortho6 usr/bin/proteinortho +usr/share/man/man1/proteinortho6.1.gz usr/share/man/man1/proteinortho.1.gz ===================================== debian/rules ===================================== @@ -11,3 +11,7 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all override_dh_auto_install: dh_auto_install --buildsystem=makefile -- install PREFIX=$(CURDIR)/debian/$(DEB_SOURCE)/usr/lib/proteinortho + +override_dh_fixperms: + dh_fixperms + find debian \( -name "*.faa" -o -name "*.gff" \) -exec chmod -x \{\} \; ===================================== debian/tests/run-unit-test ===================================== @@ -1,19 +1,19 @@ #!/bin/sh -e pkg=proteinortho -if [ "$ADTTMP" = "" ] ; then - ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` + +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM fi -cd $ADTTMP + +cd "${AUTOPKGTEST_TMP}" + mkdir test cp -a /usr/share/doc/${pkg}/examples/* test -find . -type f -name "*.gz" -exec gunzip \{\} \; -mv test/chk_test.pl . +gunzip -r * + proteinortho -project=test -synteny -singles test/*.faa -./src/chk_test.pl test.proteinortho -./src/chk_test.pl test.poff +./test/chk_test.pl test.proteinortho.tsv +./test/chk_test.pl test.poff.tsv echo "Test okay" - -make test - -rm -fr $ADTTMP/* View it on GitLab: https://salsa.debian.org/med-team/proteinortho/compare/39002aaff3b9a9a3c1da5b08b58065c27d961192...1e3a8b8e4293c01d8302b126fbea38f0c1399f0b -- View it on GitLab: https://salsa.debian.org/med-team/proteinortho/compare/39002aaff3b9a9a3c1da5b08b58065c27d961192...1e3a8b8e4293c01d8302b126fbea38f0c1399f0b You're receiving this email because of your account on salsa.debian.org.
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