Shayan Doust pushed to branch master at Debian Med / mmseqs2
Commits: 410482f1 by Shayan Doust at 2019-07-15T18:45:39Z Use system-wide gzstream instead of that in lib dir. - - - - - d91869f6 by Shayan Doust at 2019-07-15T18:57:30Z Add description to the patch - - - - - 3 changed files: - debian/control - + debian/patches/series - + debian/patches/use_system_gzstream.patch Changes: ===================================== debian/control ===================================== @@ -3,7 +3,9 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Shayan Doust <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 12~) +Build-Depends: debhelper (>= 12~), + cmake, + libgzstream-dev Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/mmseqs2 Vcs-Git: https://salsa.debian.org/med-team/mmseqs2.git ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +use_system_gzstream.patch ===================================== debian/patches/use_system_gzstream.patch ===================================== @@ -0,0 +1,30 @@ +Description: We use libgzstream-dev instead of that in lib +Author: Shayan Doust <[email protected]> +Last-Update: 2019-07-15 +--- +Index: mmseqs2/CMakeLists.txt +=================================================================== +--- mmseqs2.orig/CMakeLists.txt ++++ mmseqs2/CMakeLists.txt +@@ -79,7 +79,6 @@ add_subdirectory(lib/tinyexpr EXCLUDE_FR + include_directories(lib) + include_directories(lib/kseq) + include_directories(lib/simd) +-include_directories(lib/gzstream) + include_directories(lib/alp) + include_directories(lib/cacode) + include_directories(lib/ksw2) +Index: mmseqs2/src/CMakeLists.txt +=================================================================== +--- mmseqs2.orig/src/CMakeLists.txt ++++ mmseqs2/src/CMakeLists.txt +@@ -144,6 +144,9 @@ endif () + # tinyexpr + target_link_libraries(mmseqs-framework tinyexpr) + ++# System-wide gzstream ++target_link_libraries(mmseqs-framework gzstream) ++ + find_package(ZLIB QUIET) + if (ZLIB_FOUND) + message("-- Found ZLIB") View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/compare/c84c0ea1873aa64215d9014f88ec63bf43ee424f...d91869f6b66f2d020e8d3bcdd6ddbc8644fe9463 -- View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/compare/c84c0ea1873aa64215d9014f88ec63bf43ee424f...d91869f6b66f2d020e8d3bcdd6ddbc8644fe9463 You're receiving this email because of your account on salsa.debian.org.
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