Shayan Doust pushed to branch master at Debian Med / mmseqs2
Commits: f44fcf81 by Shayan Doust at 2019-07-16T13:02:33Z Touch up on some file installation locations - - - - - a4d501ad by Shayan Doust at 2019-07-16T13:56:30Z Arbitrary touches and patch to prevent CMake from installing in the wrong dir. - - - - - 5 changed files: - debian/mmseqs2.install - + debian/patches/fix_util_installation.patch - debian/patches/series - debian/rules - debian/tests/run-unit-test Changes: ===================================== debian/mmseqs2.install ===================================== @@ -1 +1,4 @@ -obj-x86_64-linux-gnu/src/test usr/share/doc/mmseqs2 +obj-x86_64-linux-gnu/src/test/* usr/share/doc/mmseqs2/test-binaries +util/bash-completion.sh usr/share/mmseqs2 +README.md usr/share/doc/mmseqs2 +examples usr/share/doc/mmseqs2 ===================================== debian/patches/fix_util_installation.patch ===================================== @@ -0,0 +1,18 @@ +Description: Prevent CMake from installing util/ + We handle this within *.installs outselves +Author: Shayan Doust <[email protected]> +Last-Update: 2019-07-16 +--- +Index: mmseqs2/util/CMakeLists.txt +=================================================================== +--- mmseqs2.orig/util/CMakeLists.txt ++++ mmseqs2/util/CMakeLists.txt +@@ -1,4 +1,4 @@ +-install(PROGRAMS +- bash-completion.sh +- DESTINATION util +- ) ++#install(PROGRAMS ++# bash-completion.sh ++# DESTINATION util ++# ) ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ +fix_util_installation.patch use_system_zstd.patch use_system_gzstream.patch ===================================== debian/rules ===================================== @@ -4,28 +4,8 @@ export LC_ALL=C.UTF-8 include /usr/share/dpkg/default.mk -# this provides: -# DEB_SOURCE: the source package name -# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision) -# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision -# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch -# DEB_VERSION_UPSTREAM: the package's upstream version -# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog -# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as -# specified by <https://reproducible-builds.org/specs/source-date-epoch/> -# for hardening you might like to uncomment this: -# export DEB_BUILD_MAINT_OPTIONS=hardening=+all +export DEB_BUILD_MAINT_OPTIONS=hardening=+all %: dh $@ - -### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected -#override_dh_auto_test: -#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) -# do_stuff_for_testing -#endif - -### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script -#get-orig-source: -# . debian/get-orig-source ===================================== debian/tests/run-unit-test ===================================== @@ -8,9 +8,9 @@ if [ "${AUTOPKGTEST_TMP}" = "" ] ; then trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM fi -cp -r /usr/share/doc/${pkg}/test "${AUTOPKGTEST_TMP}" +cp -r /usr/share/doc/${pkg}/test-binaries "${AUTOPKGTEST_TMP}" -cd "${AUTOPKGTEST_TMP}"/test +cd "${AUTOPKGTEST_TMP}"/test-binaries rm -r CMakeFiles cmake_install.cmake gunzip * chmod +x * View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/compare/91a82e4f1199dad44aaf132d868c8c2a082fecb0...a4d501ad416f9b23b522b8f57f666a2cfd4bfaa0 -- View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/compare/91a82e4f1199dad44aaf132d868c8c2a082fecb0...a4d501ad416f9b23b522b8f57f666a2cfd4bfaa0 You're receiving this email because of your account on salsa.debian.org.
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