Michael R. Crusoe pushed to branch master at Debian Med / prokka
Commits: 6cdfaa4b by Michael R. Crusoe at 2019-07-23T16:36:42Z New upstream version 1.13.7+dfsg - - - - - 3783ba56 by Michael R. Crusoe at 2019-07-23T16:37:57Z Update upstream source from tag 'upstream/1.13.7+dfsg' Update to upstream version '1.13.7+dfsg' with Debian dir b9148e38cf9ea4d4091b9067617e8ca5c30e1584 - - - - - afc9ba11 by Michael R. Crusoe at 2019-07-23T16:59:38Z 1.13.7+dfsg-1 - - - - - 3 changed files: - bin/prokka - debian/changelog - debian/control Changes: ===================================== bin/prokka ===================================== @@ -45,7 +45,7 @@ my @CMDLINE = ($0, @ARGV); my $OPSYS = $^O; my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS"; my $EXE = $FindBin::RealScript; -my $VERSION = "1.13.3"; +my $VERSION = "1.13.7"; my $AUTHOR = 'Torsten Seemann <[email protected]>'; my $URL = 'https://github.com/tseemann/prokka'; my $PROKKA_PMID = '24642063'; @@ -86,8 +86,8 @@ my $BIDEC = '(\d+\.\d+)'; # pattern of NN.NN for versions that can be compared my %tools = ( 'parallel' => { - GETVER => "parallel --version | grep '^GNU parallel 2'", - REGEXP => qr/GNU parallel (\d+)/, + GETVER => "parallel --version | grep -E 'parallel 2[0-9]{7}\$'", + REGEXP => qr/parallel (\d+)/, MINVER => "20130422", NEEDED => 1, }, @@ -156,13 +156,13 @@ my %tools = ( 'blastp' => { GETVER => "blastp -version", REGEXP => qr/blastp:\s+($BIDEC)/, - MINVER => "2.2", + MINVER => "2.8", NEEDED => 1, }, 'makeblastdb' => { GETVER => "makeblastdb -version", REGEXP => qr/makeblastdb:\s+($BIDEC)/, - MINVER => "2.2", + MINVER => "2.8", NEEDED => 0, # only if --proteins used }, 'tbl2asn' => { @@ -1342,7 +1342,7 @@ for my $sid (@seq) { $count{ $f->primary_tag }++; } } -for my $ft (keys %count) { +for my $ft (sort keys %count) { printf "%s: %d\n", $ft, $count{$ft}; } ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +prokka (1.13.7+dfsg-1) unstable; urgency=medium + + * New upstream release. + + -- Michael R. Crusoe <[email protected]> Tue, 23 Jul 2019 18:59:29 +0200 + prokka (1.13.4+dfsg-1.1) unstable; urgency=medium * Non-maintainer upload. ===================================== debian/control ===================================== @@ -17,7 +17,7 @@ Depends: ${misc:Depends}, ${perl:Depends}, parallel, libbio-perl-perl, - ncbi-blast+, + ncbi-blast+ (>= 2.8), hmmer, aragorn, prodigal, View it on GitLab: https://salsa.debian.org/med-team/prokka/compare/25c9b8110f87c69194990382d27621434cf28ed5...afc9ba11fd2363e9a6a9632fa0b5cf93d077ba81 -- View it on GitLab: https://salsa.debian.org/med-team/prokka/compare/25c9b8110f87c69194990382d27621434cf28ed5...afc9ba11fd2363e9a6a9632fa0b5cf93d077ba81 You're receiving this email because of your account on salsa.debian.org.
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