Martin Uecker pushed to branch upstream at Debian Med / bart
Commits: 66711cc7 by Martin Uecker at 2018-12-11T08:45:43Z some more memory leaks - - - - - a51a137f by Martin Uecker at 2018-12-11T08:45:43Z fix bart script - - - - - 4d835a66 by Martin Uecker at 2018-12-11T08:45:43Z relax unit test - - - - - c4e9c535 by Jon Tamir at 2019-01-07T13:19:12Z replace deprecated cudaThread functions - - - - - f95d4abc by Martin Uecker at 2019-01-13T12:20:35Z convolution based on tenmul - - - - - 624115fc by Siddharth Iyer at 2019-01-15T17:40:28Z Edit help string for wave.c - - - - - 5ffb8969 by Martin Uecker at 2019-01-17T13:52:54Z GPU performance workaround for md_zaxpy - - - - - 692d7fcd by Jon Tamir at 2019-01-17T19:11:52Z pics: add back comparison to image_truth - - - - - 1d254dfd by Martin Uecker at 2019-01-19T17:39:41Z vector operation: zsum - - - - - e8872413 by Martin Uecker at 2019-01-19T17:39:41Z accelerate md_zscalar2 on the GPU - - - - - 97d2ec70 by Martin Uecker at 2019-01-19T17:39:41Z allow enlive on the gpu - - - - - dca1cd4c by Yuxin Hu at 2019-03-12T08:10:30Z fix the issue that 'warm_start' won't be used if pics.c uses ADMM (#187) * propagate warmstart flag to ADMM - - - - - e9bb015f by Siddharth Iyer at 2019-03-12T17:39:08Z Decompose Complex LinOp Add `decompose_complex` as a linear operator so as to allow locally-low rank across the real-imaginary dimension for calibration-less partial Fourier. - - - - - ae1ee620 by Siddharth Iyer at 2019-03-12T17:39:08Z Add decompose_complex to wave and wshfl - - - - - 41aa9b3d by Martin Uecker at 2019-03-15T18:20:27Z fix crop == 0. case - - - - - e2f17ca6 by Martin Uecker at 2019-03-15T20:56:34Z add missing typeid - - - - - 926d6ab8 by Martin Uecker at 2019-03-15T20:56:51Z fix sum operator - - - - - eab6eb26 by Martin Uecker at 2019-03-15T20:57:01Z fix input - - - - - 5ea666ba by Martin Uecker at 2019-03-15T21:05:45Z low-rank + sparse test - - - - - 0852d09b by Martin Uecker at 2019-03-16T22:00:59Z style - - - - - 266ebd7d by Martin Uecker at 2019-03-16T22:08:36Z check ring centering constraint - - - - - ac48b2dd by Martin Uecker at 2019-03-16T23:35:28Z estdelay tests - - - - - de165122 by Martin Uecker at 2019-03-17T07:26:38Z add missing scale precondition - - - - - 0661fe9b by jschoormans at 2019-03-18T18:20:42Z small golden angles (#190) * small golden angles - - - - - 3fcf576a by Martin Uecker at 2019-03-22T16:35:46Z twixread mode for radials - - - - - f5ea37a3 by Martin Uecker at 2019-03-22T16:37:48Z twixread: add option for multi-slice MPI data - - - - - 3c253fd2 by Martin Uecker at 2019-03-22T17:01:18Z option to rotate trajectory - - - - - c7a1d8ec by Martin Uecker at 2019-03-22T17:04:02Z style issues - - - - - 3eb9f82f by Christian Holme at 2019-03-24T12:54:56Z scripts/grash.sh: update script to new extract current versions of bart extract exclude the end index. This commit updates the script to be compatible with newer versions of bart. - - - - - 61b6cb31 by Martin Uecker at 2019-03-24T18:44:57Z check compatibility of trajectory - - - - - d27234ca by Martin Uecker at 2019-03-24T18:44:57Z median fix and tests - - - - - e08f7488 by Martin Uecker at 2019-03-24T18:44:57Z improve gridding code - - - - - 47fce6bb by Martin Uecker at 2019-03-24T19:27:22Z check for beta - - - - - 29152e8e by Martin Uecker at 2019-04-01T08:28:19Z dicom export fix - - - - - c869a183 by Martin Uecker at 2019-04-01T08:33:12Z delete residual temporary test files - - - - - f622823f by Martin Uecker at 2019-04-01T10:04:36Z read multi-raid files - - - - - 95bad642 by Martin Uecker at 2019-04-03T20:04:11Z style - - - - - 0aa68e75 by Martin Uecker at 2019-04-23T10:01:42Z add .._chain_FF set of functions - - - - - 94aaa3ed by Martin Uecker at 2019-04-23T10:01:42Z rotations using ffts - - - - - b7e4e75b by Martin Uecker at 2019-04-23T10:01:42Z iter4_irgnm: check operator type - - - - - 039fb072 by Martin Uecker at 2019-04-23T10:01:42Z add test for transverse delays - - - - - 24d65bc7 by Martin Uecker at 2019-04-26T10:24:09Z cc: warn if calibration region is empty. - - - - - 827c18e3 by Martin Uecker at 2019-04-30T06:43:49Z add noexec-stack hack - - - - - 97256c83 by Martin Uecker at 2019-04-30T20:00:50Z add missing NESTED_CALL (thanks to Simon Yeung) - - - - - 41b867fc by Martin Uecker at 2019-04-30T20:10:44Z NOEXEC_FLAG: makefile and README - - - - - 25f517aa by Siddharth Iyer at 2019-05-01T06:56:42Z changed kern_adj in wshfl to be faster (#191) - - - - - e1cf25fb by Jon Tamir at 2019-05-01T06:57:00Z fix missing isnanf for Mac (#192) - - - - - b83d8507 by aTrotier at 2019-05-06T13:54:56Z Add custom angle to traj (#193) - - - - - e9ef4036 by Christian Holme at 2019-05-30T18:02:07Z src/slice.c: extend to allow multiple dims and pos Similar to resize, slice now accepts an arbitrary number of dims and positions. - - - - - b4400c69 by Christian Holme at 2019-05-30T18:02:07Z add test for new multidimensional slice - - - - - 824129b0 by Christian Holme at 2019-06-04T15:44:29Z src/extract.c: update to new #ifndef's all other tools use this construction with #ifndef, so extract should, too - - - - - 7344fb69 by Christian Holme at 2019-06-04T15:44:29Z src/extract.c: add test and extend to multiple dims Similar to resize and slice, extract now accepts an arbitrary number of dims and positions (starts and ends). Additionally, there are now tests for the old and new behavior of extract - - - - - 9a74a8bb by Martin Uecker at 2019-06-13T18:28:05Z automatic rebuilds for makefile changes - - - - - a720b50f by Siddharth Iyer at 2019-06-14T09:06:00Z calloc -> alloc_sameplace in kern_adj - - - - - 6957d45f by Siddharth Iyer at 2019-06-14T09:06:00Z Search for crop threshold in sure-espirit. - Implemented a bisection-like search for sure-ecalib. - This avoids the need to search a grid of crop values. - Fix: Cast to floats for div and mse in sure_crop. - - - - - 90b7fcef by Siddharth Iyer at 2019-06-18T05:47:46Z fix: Missing clears added to sure_calib - - - - - db13c86a by rosenzweig at 2019-06-18T12:42:20Z pics: SMS bugfix - - - - - 4d6bc064 by rosenzweig at 2019-06-18T12:42:20Z pics: Allow toeplitz for sms - - - - - 465c9045 by rosenzweig at 2019-06-18T12:42:20Z pics: Allow pattern for non-Cartesian trajectories - - - - - b7b322c8 by rosenzweig at 2019-06-18T12:42:20Z pics, noncart/nufft: Efficient basis function implementation - - - - - 1252b6dd by rosenzweig at 2019-06-18T12:42:20Z tests: Test memory efficient basis approach - - - - - ec434c7a by Martin Uecker at 2019-06-24T19:22:12Z fix warning - - - - - 34aaeb88 by Martin Uecker at 2019-06-24T19:30:40Z new trampoline code for GCC >= 10 - - - - - fa531930 by rosenzweig at 2019-06-25T12:07:08Z misc/opts: vec2 options - - - - - d4e6e2e3 by rosenzweig at 2019-06-25T18:32:04Z rewrite traj tool - - - - - e2086900 by Martin Uecker at 2019-06-30T18:53:56Z nufft: style and minor changes - - - - - 2a949a79 by xwang at 2019-07-08T18:18:38Z add zsmax functions for cpu and gpu - - - - - b70b41e4 by Martin Uecker at 2019-07-08T18:19:01Z fix prerequesites for some test cases - - - - - a123293b by Martin Uecker at 2019-07-08T18:19:51Z shared_obj_unref wich does not delete - - - - - 50e3e290 by Martin Uecker at 2019-07-08T18:51:19Z remove unnecessary CMPLX - - - - - f54e2055 by Martin Uecker at 2019-07-14T19:01:43Z update operator framework - - - - - a3f80ba9 by Martin Uecker at 2019-07-14T19:03:24Z mat_pinv - - - - - d8f0f496 by Martin Uecker at 2019-07-14T19:03:24Z mat_pinv utest - - - - - ec3e71dc by Martin Uecker at 2019-07-14T19:07:40Z sync some files with internal version - - - - - 817802f6 by Martin Uecker at 2019-07-14T19:22:23Z sync all linops to internal version - - - - - fec3d935 by Martin Uecker at 2019-07-14T19:29:17Z change TYPES macros - - - - - 60bb07d3 by Martin Uecker at 2019-07-14T19:29:17Z top-level regularization parameter - - - - - 00222a19 by Martin Uecker at 2019-07-14T19:29:17Z itop_p_create - - - - - f5b4359a by Martin Uecker at 2019-07-14T19:29:18Z lsqr/lad return operator_p - - - - - 1c48f326 by Martin Uecker at 2019-07-14T19:38:44Z unit tests for operators - - - - - 537520a7 by Martin Uecker at 2019-07-14T20:42:45Z fix ubsan error - - - - - cee9c2e0 by Martin Uecker at 2019-07-14T20:44:05Z temporarily deactivate tests on clang - - - - - 1a0bc8bb by Siddharth Iyer at 2019-07-15T09:58:46Z Change complicated bisection-like search to a simpler line search in sure_crop - - - - - 5b893e54 by Siddharth Iyer at 2019-07-15T09:58:46Z Stricter auto-espirit test - - - - - ac1ea4a1 by Martin Uecker at 2019-07-16T18:44:53Z update coil simulation - - - - - 30dc3b09 by Martin Uecker at 2019-07-16T18:44:53Z fix whitening bug - - - - - aca6f78c by Martin Uecker at 2019-07-16T19:56:26Z tgv denoiser - - - - - b4bd20f1 by Siddharth Iyer at 2019-07-16T19:58:54Z Rename Xlinop_reshape to linop_wavereshape - - - - - 1dc2cc28 by Siddharth Iyer at 2019-07-16T19:58:54Z Modify wshfl to apply ESPIRiT coil by coil. This should allow for the GPU to be used per channel. - - - - - b479b804 by Siddharth Iyer at 2019-07-16T19:58:54Z Minor formatting change for printdims in wshfl - - - - - edd0df3b by Siddharth Iyer at 2019-07-18T15:09:40Z Change complicated spacing to simple printf - - - - - 5b15d50f by Siddharth Iyer at 2019-07-18T15:09:40Z bug fix: missed typed dims for multi-set espirit map case - - - - - 7f1dd815 by Siddharth Iyer at 2019-07-18T15:09:40Z formatting - - - - - 38734385 by Martin Uecker at 2019-07-22T07:23:50Z refactor compute_kern - - - - - 7cd3dfb3 by Martin Uecker at 2019-07-22T07:23:50Z guard dims manipulation by check for basis - - - - - 8705289e by Martin Uecker at 2019-07-22T22:44:53Z make it possible to run individual tests - - - - - e5c12b3a by Siddharth Iyer at 2019-07-22T22:56:53Z Move noise calreg to md_calloc for 3D estvar - - - - - f86441b7 by Siddharth Iyer at 2019-07-22T22:56:53Z Formatting changes to estvar.c - - - - - 88d584ba by Martin Uecker at 2019-07-27T13:18:58Z fix CUDA strided memcpy - - - - - 1ce3ed79 by Martin Uecker at 2019-07-27T13:19:12Z update md functions - - - - - de4c1bfb by Martin Uecker at 2019-07-27T13:22:50Z types.h more self-sustaining - - - - - 57ac07ef by Martin Uecker at 2019-07-27T13:52:58Z update iterative algorithms and nonlinear inversion - - - - - d720f40e by Martin Uecker at 2019-07-27T14:01:36Z document gfortran dependency - - - - - 02afdecd by Martin Uecker at 2019-08-09T19:51:44Z function for setting random initial state in wavthresh - - - - - f7671445 by Martin Uecker at 2019-08-09T19:53:25Z iter3: add step config variable - - - - - 9bf7ec1c by Martin Uecker at 2019-08-09T20:27:04Z model-based reconstruction for look-locker experiments - - - - - 1fc89d24 by Martin Uecker at 2019-08-16T12:22:30Z use long for index in gridding code - - - - - 03e4559f by Martin Uecker at 2019-08-19T21:37:34Z rewrite memory-efficient basis - - - - - f32b2342 by Martin Uecker at 2019-08-19T21:37:34Z reduce memory - - - - - 4b75a0cc by Martin Uecker at 2019-08-19T21:37:34Z minor fixes - - - - - b4421ea6 by Martin Uecker at 2019-08-19T21:37:34Z automatic choice - - - - - 6edc7b13 by Martin Uecker at 2019-08-19T21:37:34Z fix bug in basis approach, add test, change debug output - - - - - 921931ed by Martin Uecker at 2019-08-19T21:37:34Z use low-mem flag for basis computation - - - - - 665f6f14 by Martin Uecker at 2019-08-19T21:37:34Z low-mem flag for pics - - - - - 9c572fd7 by Martin Uecker at 2019-08-19T22:28:55Z use low-mem in test - - - - - d0e66487 by Martin Uecker at 2019-08-20T06:12:33Z update and reorganize references - - - - - a201218d by Martin Uecker at 2019-08-22T13:04:13Z model-based change parameter - - - - - 8ade579b by Martin Uecker at 2019-08-22T13:04:17Z look locker post-processing - - - - - 6380e593 by Martin Uecker at 2019-08-22T13:07:05Z license year - - - - - f7f9ba35 by Siddharth Iyer at 2019-08-23T12:07:19Z Allow multi-coeff wave psf - - - - - 807ac4b2 by Siddharth Iyer at 2019-08-23T12:07:19Z Reorder nrmse command in wshfl.mk - - - - - 30 changed files: - .travis.yml - LICENSE - Makefile - README - build_targets.mk - + doc/applications.txt - doc/references.txt - matlab/bart.m - + rules/moba.mk - rules/num.mk - scripts/grasp.sh - src/bench.c - src/calib/calib.c - src/calib/calibcu.cu - src/calib/estvar.c - src/cc.c - src/dfwavelet/dfwavelet_kernels.cu - src/dfwavelet/prox_dfwavelet.c - src/ecalib.c - src/estdelay.c - src/extract.c - + src/fftrot.c - src/filter.c - src/grecon/italgo.c - src/grecon/optreg.c - src/iter/admm.h - src/iter/italgos.c - src/iter/italgos.h - src/iter/iter.c - src/iter/iter.h The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/bart/compare/b301ca87c96388a08cdc501288419405adf4b083...807ac4b269c4c301f804f2744e3b0e97d5544462 -- View it on GitLab: https://salsa.debian.org/med-team/bart/compare/b301ca87c96388a08cdc501288419405adf4b083...807ac4b269c4c301f804f2744e3b0e97d5544462 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
