Shayan Doust pushed to branch master at Debian Med / lefse
Commits: 3295faf2 by Shayan Doust at 2019-09-11T14:19:31Z Include an autopkgtest Simple comparative tests to see if installed files return an expected output - - - - - 2 changed files: - + debian/tests/control - + debian/tests/run-unit-test Changes: ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,60 @@ +#!/bin/bash +set -e + +# Run comparative tests to see if we get an expected default output. Test installed files so no need to move them. + +# run_lefse +if [[ $(run_lefse 2>&1) = "usage: run_lefse [-h]"* ]]; then + echo "run_lefse comparative pass" +else + echo "run_lefse comparative fail" + exit 1 +fi + +# format_input +if [[ $(format_input 2>&1) = "usage: format_input [-h]"* ]]; then + echo "format_input comparative pass" +else + echo "format_input comparative fail" + exit 1 +fi + +# lefse2circlader +if [[ $(lefse2circlader -h 2>&1) = "usage: lefse2circlader [-h]"* ]]; then + echo "lefse2circlader comparative pass" +else + echo "lefse2circlader comparative fail" + exit 1 +fi + +# plot_cladogram +if [[ $(plot_cladogram 2>&1) = "usage: plot_cladogram [-h]"* ]]; then + echo "plot_cladogram comparative pass" +else + echo "plot_cladogram comparative fail" + exit 1 +fi + +# plot_features +if [[ $(plot_features 2>&1) = "usage: plot_features [-h]"* ]]; then + echo "plot_features comparative pass" +else + echo "plot_features comparative fail" + exit 1 +fi + +# plo_res +if [[ $(plot_res 2>&1) = "usage: plot_res [-h]"* ]]; then + echo "plot_res comparative pass" +else + echo "plot_res comparative fail" + exit 1 +fi + +# qiime2lefse +if [[ $(qiime2lefse -h 2>&1) = "usage: qiime2lefse [-h]"* ]]; then + echo "qiime2lefse comparative pass" +else + echo "qiime2lefse comparative fail" + exit 1 +fi View it on GitLab: https://salsa.debian.org/med-team/lefse/commit/3295faf2f0be49bff623d39f6bf6d3efadbcab90 -- View it on GitLab: https://salsa.debian.org/med-team/lefse/commit/3295faf2f0be49bff623d39f6bf6d3efadbcab90 You're receiving this email because of your account on salsa.debian.org.
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