Steffen Möller pushed to branch master at Debian Med / diamond-aligner
Commits:
e83bc042 by Steffen Moeller at 2019-09-21T09:42:39Z
Uploaded to unstable.
- - - - -
3 changed files:
- debian/changelog
- debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch
- debian/patches/no_march_native.patch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-diamond-aligner (0.9.26+dfsg-1) UNRELEASED; urgency=medium
+diamond-aligner (0.9.26+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
=====================================
debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch
=====================================
@@ -7,16 +7,16 @@ Subject: [PATCH] Fixed #295.
src/dp/needleman_wunsch.cpp | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
-diff --git a/src/dp/needleman_wunsch.cpp b/src/dp/needleman_wunsch.cpp
-index abb47bb..2050eea 100644
---- a/src/dp/needleman_wunsch.cpp
-+++ b/src/dp/needleman_wunsch.cpp
-@@ -167,7 +167,7 @@ const Fixed_score_buffer<_score>&
needleman_wunsch(sequence query, sequence subj
+Index: diamond-aligner/src/dp/needleman_wunsch.cpp
+===================================================================
+--- diamond-aligner.orig/src/dp/needleman_wunsch.cpp
++++ diamond-aligner/src/dp/needleman_wunsch.cpp
+@@ -167,7 +167,7 @@ const Fixed_score_buffer<_score>& needle
return mtx.score_buffer();
}
--template const Fixed_score_buffer<int>& needleman_wunsch(sequence query,
sequence subject, int &max_score, const Local&, const int&);
-+// template const Fixed_score_buffer<int>& needleman_wunsch(sequence query,
sequence subject, int &max_score, const Local&, const int&);
+-template const Fixed_score_buffer<int>& needleman_wunsch<int, Local>(sequence
query, sequence subject, int &max_score, const Local&, const int&);
++//template const Fixed_score_buffer<int>& needleman_wunsch<int,
Local>(sequence query, sequence subject, int &max_score, const Local&, const
int&);
int needleman_wunsch(sequence query, sequence subject, int qbegin, int qend,
int sbegin, int send, unsigned node, unsigned edge, Diag_graph &diags, bool log)
{
=====================================
debian/patches/no_march_native.patch
=====================================
@@ -3,9 +3,11 @@ Bug-Debian: https://bugs.debian.org/906615
Author: Andreas Tille <[email protected]>
Last-Update: Sun, 19 Aug 2018 06:38:58 +0200
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -14,10 +14,10 @@ if(CMAKE_BUILD_MARCH)
+Index: diamond-aligner/CMakeLists.txt
+===================================================================
+--- diamond-aligner.orig/CMakeLists.txt
++++ diamond-aligner/CMakeLists.txt
+@@ -38,10 +38,10 @@ elseif(CMAKE_BUILD_MARCH)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=${CMAKE_BUILD_MARCH}")
else()
include(CheckCXXCompilerFlag)
View it on GitLab:
https://salsa.debian.org/med-team/diamond-aligner/commit/e83bc042658f3d3f3b7dbf80a84069a0dc4bfc35
--
View it on GitLab:
https://salsa.debian.org/med-team/diamond-aligner/commit/e83bc042658f3d3f3b7dbf80a84069a0dc4bfc35
You're receiving this email because of your account on salsa.debian.org.
_______________________________________________
debian-med-commit mailing list
[email protected]
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
