Shayan Doust pushed to branch master at Debian Med / bcalm
Commits: 700890df by Shayan Doust at 2019-09-23T10:57:49Z Patch to fix the test scripts to use the correct binary - - - - - 2 changed files: - + debian/patches/fix_tests.patch - debian/patches/series Changes: ===================================== debian/patches/fix_tests.patch ===================================== @@ -0,0 +1,30 @@ +Description: force test scripts to use /usr/bin/bcalm + Use /usr/bin/bcalm and not the binary in the build directory. +Author: Shayan Doust <[email protected]> +Last-Update: 2019-09-23 +--- + +Index: bcalm/example/run-tiny.sh +=================================================================== +--- bcalm.orig/example/run-tiny.sh 2019-09-23 11:55:25.936891862 +0100 ++++ bcalm/example/run-tiny.sh 2019-09-23 11:55:25.928891770 +0100 +@@ -1,2 +1 @@ +-bcalm=`find ../*/bcalm | head -n 1` # covers bin/ and build/ cases +-$bcalm -in tiny_read.fa -kmer-size 13 -abundance-min 1 $1 $2 ++bcalm -in tiny_read.fa -kmer-size 13 -abundance-min 1 $1 $2 +Index: bcalm/example/circular_unitigs_unittests/CMD +=================================================================== +--- bcalm.orig/example/circular_unitigs_unittests/CMD 2019-09-23 11:55:25.936891862 +0100 ++++ bcalm/example/circular_unitigs_unittests/CMD 2019-09-23 11:55:25.928891770 +0100 +@@ -1,9 +1,9 @@ + #!/bin/bash + if [ "$1" == "3" ] + then +- ../../build/bcalm -in test3.fa -kmer-size 7 -abundance-min 1 -minimizer-size 5 ++ bcalm -in test3.fa -kmer-size 7 -abundance-min 1 -minimizer-size 5 + exit 0 + fi + +-../../build/bcalm -in test1.fa -kmer-size 7 -abundance-min 1 -minimizer-size 5 ++bcalm -in test1.fa -kmer-size 7 -abundance-min 1 -minimizer-size 5 + ===================================== debian/patches/series ===================================== @@ -1 +1,2 @@ +fix_tests.patch modify_cmake.patch View it on GitLab: https://salsa.debian.org/med-team/bcalm/commit/700890df208d1f947781fbf17c1fde24262ebc09 -- View it on GitLab: https://salsa.debian.org/med-team/bcalm/commit/700890df208d1f947781fbf17c1fde24262ebc09 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
