Shayan Doust pushed to branch master at Debian Med / bcalm
Commits:
d2193a06 by Shayan Doust at 2019-09-28T01:29:52Z
Enforce encoding. Maybe this will work for those getting the error?
- - - - -
1 changed file:
- debian/missing-sources/compare_fasta.py
Changes:
=====================================
debian/missing-sources/compare_fasta.py
=====================================
@@ -12,9 +12,9 @@ def normalize(seq):
def read_seqs(fasta):
seqs = set()
- for line in open(fasta):
+ for line in open(fasta, encoding="utf8", errors='ignore'):
if line[0] == '>': continue
- seqs.add(normalize(str(line.strip())))
+ seqs.add(normalize(str(line).strip()))
return seqs
s1 = read_seqs(fasta1)
View it on GitLab:
https://salsa.debian.org/med-team/bcalm/commit/d2193a067d2856d50d8fe917a7ff2a9393e88a79
--
View it on GitLab:
https://salsa.debian.org/med-team/bcalm/commit/d2193a067d2856d50d8fe917a7ff2a9393e88a79
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