Shayan Doust pushed to branch master at Debian Med / bcalm
Commits:
ca037c3a by Shayan Doust at 2019-10-02T19:45:02Z
Decompressed compressed files and more verbosity
- - - - -
2 changed files:
- debian/missing-sources/simple_test.sh
- debian/tests/run-unit-test
Changes:
=====================================
debian/missing-sources/simple_test.sh
=====================================
@@ -2,7 +2,7 @@
#rm -f reference.fasta
#wget
https://raw.githubusercontent.com/GATB/MindTheGap/f5cb0fec816686c7393772787d736565c4f056a4/test/full_test/reference.fasta
>& /dev/null
-bcalm -in reference.fasta -abundance-min 1 > /dev/null >& /dev/null
+bcalm -in reference.fasta -abundance-min 1
#rm -rf reference.unitigs.fa.glue*
#rm -f compare_fasta.py
#wget
https://raw.githubusercontent.com/GATB/minia/master/test/compare_fasta.py >&
/dev/null
=====================================
debian/tests/run-unit-test
=====================================
@@ -14,5 +14,7 @@ cp -a /usr/share/doc/${pkg}/test/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
+find . -name "*.gz" -exec gunzip \{\} \;
+
bash run-tiny.sh
bash simple_test.sh
View it on GitLab:
https://salsa.debian.org/med-team/bcalm/commit/ca037c3a5d1eb86e7e2d612a51e875d374271da9
--
View it on GitLab:
https://salsa.debian.org/med-team/bcalm/commit/ca037c3a5d1eb86e7e2d612a51e875d374271da9
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