Michael R. Crusoe pushed to branch master at Debian Med / profnet
Commits: 3e9d345a by Michael R. Crusoe at 2019-10-03T09:45:07Z debhelper-compat 12 - - - - - d261b600 by Michael R. Crusoe at 2019-10-03T09:51:24Z Standards-Version: 4.4.1 - - - - - fb1b0496 by Michael R. Crusoe at 2019-10-03T09:51:43Z Remove trailing whitespace in debian/changelog - - - - - dd069c95 by Michael R. Crusoe at 2019-10-03T09:51:44Z Remove trailing whitespace in debian/copyright - - - - - cfb6cd38 by Michael R. Crusoe at 2019-10-03T09:51:44Z Use secure URI in Homepage field. Fixes lintian: homepage-field-uses-insecure-uri See https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html for more details. - - - - - ee3c2d3d by Michael R. Crusoe at 2019-10-03T09:51:44Z Set upstream metadata fields: Contact, Name. - - - - - c5a792a3 by Michael R. Crusoe at 2019-10-03T09:51:44Z fix a spelling typo - - - - - dea8b737 by Michael R. Crusoe at 2019-10-03T09:53:04Z hardening works, remove comment to the contrary - - - - - 8 changed files: - debian/changelog - − debian/compat - debian/control - debian/copyright - debian/patches/series - + debian/patches/spelling - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,16 @@ +profnet (1.0.22-7) UNRELEASED; urgency=medium + + * Team upload. + * debhelper-compat 12 + * Standards-Version: 4.4.1 + * Remove trailing whitespace in debian/changelog + * Remove trailing whitespace in debian/copyright + * Use secure URI in Homepage field. + * Set upstream metadata fields: Contact, Name. + * Fix a spelling typo + + -- Michael R. Crusoe <[email protected]> Thu, 03 Oct 2019 11:45:07 +0200 + profnet (1.0.22-6) unstable; urgency=medium * debhelper 11 @@ -29,11 +42,11 @@ profnet (1.0.22-3) unstable; urgency=medium * cme fix dpkg-control * add example file and testsuite for profnet-prof * same testsuite works for several other packages (profnet-chop, profnet-con, - profnet-isis, profnet-snapfun). Add debian/*.examples files for these - packages and add to debian/tests/control + profnet-isis, profnet-snapfun). Add debian/*.examples files for these + packages and add to debian/tests/control * mention debian/examples/PROFacc_tst.jct in debian/copyright * add debian/docs, debian/README.test - * change debian/docs to set of {package}.docs for packages profnet-chop, + * change debian/docs to set of {package}.docs for packages profnet-chop, profnet-con, profnet-isis, profnet-snapfun, profnet-prof. [ Andreas Tille ] ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -5,13 +5,13 @@ Uploaders: Guy Yachdav <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 12), gfortran, rsync -Standards-Version: 4.2.1 +Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/profnet Vcs-Git: https://salsa.debian.org/med-team/profnet.git -Homepage: http://www.predictprotein.org/ +Homepage: https://www.predictprotein.org/ Package: profnet-bval Architecture: any ===================================== debian/copyright ===================================== @@ -9,7 +9,7 @@ Copyright: EMBL CUBIC (Columbia University, NY, USA) LION Biosciences (Heidelberg, DE) - . + . Copyright (C) 2009-2011 by Laszlo Kajan <[email protected]> Technical University Munich (DE) . @@ -34,11 +34,11 @@ Copyright: 2009-2013 L. Kajan <[email protected]> Laszlo Kajan <[email protected]> Technical University Munich (DE) License: GPL-2+ Comment: - Although file named PROFacc_test.jct is mentioned in upstream's src and - *_dir folders, namely, in command in RUN-special file, it wasn't present - in upstream. + Although file named PROFacc_test.jct is mentioned in upstream's src and + *_dir folders, namely, in command in RUN-special file, it wasn't present + in upstream. . - It was found in `profphd` package's upstream src/prof/net/ folder and + It was found in `profphd` package's upstream src/prof/net/ folder and inherits corresponding license. License: GPL-2+ @@ -46,12 +46,12 @@ License: GPL-2+ it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version. - . + . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. - . + . You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. . ===================================== debian/patches/series ===================================== @@ -1 +1,2 @@ hardening.patch +spelling ===================================== debian/patches/spelling ===================================== @@ -0,0 +1,11 @@ +--- profnet.orig/src-phd/phd.f ++++ profnet/src-phd/phd.f +@@ -283,7 +283,7 @@ + WRITE(6,'(T2,70A1)')('*',ITER=1,70) + WRITE(6,'(T2,A3)')'***' + WRITE(6,'(T2,3A1,T10,A,T30,A50)')('*',ITER=1,3), +- + 'An error occurred: the adressed HSSP file is empty.' ++ + 'An error occurred: the addressed HSSP file is empty.' + WRITE(6,'(T2,3A1,T10,A,T30,A50)')('*',ITER=1,3), + + 'Program has stopped consequently !' + WRITE(6,'(T2,A3)')'***' ===================================== debian/rules ===================================== @@ -2,7 +2,6 @@ # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 -# Somehow the hardening options are not propagated export DEB_BUILD_MAINT_OPTIONS = hardening=+all %: ===================================== debian/upstream/metadata ===================================== @@ -1,20 +1,21 @@ Reference: - - Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost - Journal: Bioinformatics - Year: 2006 Apr 1 - Volume: 22 - Number: 7 - Pages: 891-893 - Title: "OPRFbval: predict flexible and rigid residues in proteins" - PMID: 16455751 - DOI: 10.1093/bioinformatics/btl032 - URL: https://academic.oup.com/bioinformatics/article/22/7/891/202796 - ePrint: "https://academic.oup.com/bioinformatics/article-pdf/\ - 22/7/891/523458/btl032.pdf" +- Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost + Journal: Bioinformatics + Year: 2006 Apr 1 + Volume: 22 + Number: 7 + Pages: 891-893 + Title: "OPRFbval: predict flexible and rigid residues in proteins" + PMID: 16455751 + DOI: 10.1093/bioinformatics/btl032 + URL: https://academic.oup.com/bioinformatics/article/22/7/891/202796 + ePrint: "https://academic.oup.com/bioinformatics/article-pdf/22/7/891/523458/btl032.pdf"; Registry: - - Name: OMICtools - Entry: OMICS_09791 - - Name: bio.tools - Entry: NA - - Name: SciCrunch - Entry: NA +- Name: OMICtools + Entry: OMICS_09791 +- Name: bio.tools + Entry: NA +- Name: SciCrunch + Entry: NA +Name: profnet +Contact: [email protected] View it on GitLab: https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b -- View it on GitLab: https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b You're receiving this email because of your account on salsa.debian.org.
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