Sascha Steinbiss pushed to branch master at Debian Med / mash
Commits: a38bf3a3 by Sascha Steinbiss at 2019-10-23T16:39:39Z new upstream release - - - - - c24e551d by Sascha Steinbiss at 2019-10-23T16:39:49Z New upstream version 2.2.2+dfsg - - - - - d16740f3 by Sascha Steinbiss at 2019-10-23T16:40:15Z Merge tag 'upstream/2.2.2+dfsg' Upstream version 2.2.2+dfsg - - - - - 3 changed files: - debian/changelog - src/mash/Sketch.cpp - src/mash/version.h Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +mash (2.2.2+dfsg-1) unstable; urgency=medium + + [ Steffen Moeller ] + * Added ref to Conda. + + [ Sascha Steinbiss ] + * New upstream release. + + -- Sascha Steinbiss <[email protected]> Wed, 23 Oct 2019 18:38:19 +0200 + mash (2.2.1+dfsg-1) unstable; urgency=medium * New upstream release. ===================================== src/mash/Sketch.cpp ===================================== @@ -534,17 +534,19 @@ void addMinHashes(MinHashHeap & minHashHeap, char * seq, uint64_t length, const reverseComplement(seq, seqRev, length); } + uint64_t j = 0; + for ( uint64_t i = 0; i < length - kmerSize + 1; i++ ) { // repeatedly skip kmers with bad characters // bool bad = false; // - for ( uint64_t j = i; j < i + kmerSize && i + kmerSize <= length; j++ ) + for ( ; j < i + kmerSize && i + kmerSize <= length; j++ ) { if ( ! parameters.alphabet[seq[j]] ) { - i = j; // skip to past the bad character + i = j++; // skip to past the bad character bad = true; break; } ===================================== src/mash/version.h ===================================== @@ -4,4 +4,4 @@ // // See the LICENSE.txt file included with this software for license information. -static const char * version = "2.2"; +static const char * version = "2.2.2"; View it on GitLab: https://salsa.debian.org/med-team/mash/compare/089f06d5e7e08d430a44f08d05f54a2f069105c7...d16740f369bcbaa403a1d89c543b3208a09383d5 -- View it on GitLab: https://salsa.debian.org/med-team/mash/compare/089f06d5e7e08d430a44f08d05f54a2f069105c7...d16740f369bcbaa403a1d89c543b3208a09383d5 You're receiving this email because of your account on salsa.debian.org.
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