Dylan Aïssi pushed to branch master at Debian Med / beagle
Commits: ed1abfd5 by Dylan Aïssi at 2019-11-20T07:13:11Z Replace ADTTMP with AUTOPKGTEST_TMP - - - - - 2 changed files: - debian/changelog - debian/tests/run-sample-analysis Changes: ===================================== debian/changelog ===================================== @@ -1,6 +1,7 @@ beagle (5.1-191108+dfsg-1) UNRELEASED; urgency=medium * New upstream release. + * Replace ADTTMP with AUTOPKGTEST_TMP. -- Dylan Aïssi <[email protected]> Wed, 20 Nov 2019 08:00:44 +0100 ===================================== debian/tests/run-sample-analysis ===================================== @@ -2,14 +2,13 @@ # http://dep.debian.net/deps/dep8/ # Autopkgtest: Test if beagle run analysis correctly # Author: Dylan Aïssi <[email protected]> -# Last-Update: 2019-09-19 pkg=beagle -if [ "$ADTTMP" = "" ] ; then - ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` fi -cd $ADTTMP -cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP +cd $AUTOPKGTEST_TMP +cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP # Generate necessary files gzip test.vcf @@ -26,4 +25,4 @@ beagle ref=ref.vcf.gz gt=target.vcf.gz out=out.ref # Beagle with bref3 file beagle ref=ref.bref3 gt=target.vcf.gz out=out.bref3 -rm -f $ADTTMP/* +rm -f $AUTOPKGTEST_TMP/* View it on GitLab: https://salsa.debian.org/med-team/beagle/commit/ed1abfd5f2b8d249876ef923346d48718f78d48f -- View it on GitLab: https://salsa.debian.org/med-team/beagle/commit/ed1abfd5f2b8d249876ef923346d48718f78d48f You're receiving this email because of your account on salsa.debian.org.
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