Steffen Möller pushed to branch master at Debian Med / bcbio
Commits: 207e7cea by Steffen Möller at 2019-11-26T14:06:31Z More dependencies - - - - - 2 changed files: - debian/TODO - debian/control Changes: ===================================== debian/TODO ===================================== @@ -33,25 +33,25 @@ dependencies that only surfaced as a need because of some better testing convinced that this is no longer required. Unclear - beautifulsoup4 - dnapi - fadapa - htslib # not called directly? + beautifulsoup4 https://www.crummy.com/software/BeautifulSoup/ ipyparallel >=6.0.2 ipython-cluster-helper >=0.6.1 - msgpack-python - py - pycrypto - pytest-cov >=2.6.1 - pytest-mock + #py # conda-specific python-dateutil >=2.5.0 # likely obsolete? - pyyaml - seaborn # not called directly? + pyyaml https://pyyaml.org/wiki/PyYAML seqcluster # not yet in new + To be packaged + dnapi https://github.com/jnktsj/DNApi + fadapa https://github.com/fadapa/fadapa + pycrypto Available in Debian but not added as a dependency (yet) boto - pip + htslib # not called directly? + #pip # ridiculous openssl >=1.1.1c,<1.1.2a + pytest-mock + pytest-cov + seaborn # not called directly? yamllint Already a dependency pytest # an implicit python build dependency @@ -65,6 +65,7 @@ convinced that this is no longer required. joblib >=0.12 logbook matplotlib + msgpack-python https://msgpack.org/ mock python pandas ===================================== debian/control ===================================== @@ -82,7 +82,8 @@ Recommends: python3-tabulate Suggests: bcbio-doc, - python3-bioblend + python3-bioblend, + python3-msgpack Description: library for analysing high-throughput sequencing data This package installs the Python 3 libraries of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/207e7cead05c044a2617352ee57bf0f3003a5a64 -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/207e7cead05c044a2617352ee57bf0f3003a5a64 You're receiving this email because of your account on salsa.debian.org.
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