Sascha Steinbiss pushed to branch master at Debian Med / vmatch
Commits: 04f4a34d by Sascha Steinbiss at 2020-01-03T10:10:32+01:00 new upstream version - - - - - d04bf7e9 by Sascha Steinbiss at 2020-01-03T10:11:29+01:00 New upstream version 2.3.0+git20200101.0.b1bd228+dfsg - - - - - 5fc91a2e by Sascha Steinbiss at 2020-01-03T10:11:37+01:00 Update upstream source from tag 'upstream/2.3.0+git20200101.0.b1bd228+dfsg' Update to upstream version '2.3.0+git20200101.0.b1bd228+dfsg' with Debian dir 89058dde057f01a3c4c51e66919d8b64e2b67f64 - - - - - 7 changed files: - debian/changelog - src/Mkvtree/remainsort.c - src/Vmatch/allmclust.c - src/Vmatch/chncallparse.c - src/kurtz-basic/multiseq-adv.c - src/kurtz-basic/procopt.c - src/kurtz/programversion.c Changes: ===================================== debian/changelog ===================================== @@ -1,5 +1,5 @@ -vmatch (2.3.0+dfsg-1) unstable; urgency=medium +vmatch (2.3.0+git20200101.0.b1bd228+dfsg-1) unstable; urgency=medium - * Initial release (Closes: #) + * Initial release (Closes: #947954) - -- Sascha Steinbiss <[email protected]> Mon, 30 Dec 2019 14:49:09 +0100 + -- Sascha Steinbiss <[email protected]> Fri, 03 Jan 2020 10:10:26 +0100 ===================================== src/Mkvtree/remainsort.c ===================================== @@ -195,7 +195,7 @@ void addunsortedrange(Rmnsufinfo *rmnsufinfo, { if(left == right) { - printf("allready sorted(%lu,%lu,%lu)\n", + printf("already sorted(%lu,%lu,%lu)\n", (Showuint) depth,(Showuint) (left-rmnsufinfo->sortedsuffixes), (Showuint) (right-rmnsufinfo->sortedsuffixes)); rmnsufinfo->countovermaxdepthsingle++; ===================================== src/Vmatch/allmclust.c ===================================== @@ -56,7 +56,7 @@ Sint genericmatchclustering(Matchclustercallinfo *matchclustercallinfo, } } else { - ERROR0("unkown matchclustertype"); + ERROR0("unknown matchclustertype"); return (Sint) -3; } } ===================================== src/Vmatch/chncallparse.c ===================================== @@ -270,7 +270,7 @@ Sint parsechain2dim(BOOL fromvmatch, "each followed by a number specifies the minimum\n" "length and the maximum error rate of thread\n" "1 refers to match instance in indexed sequence\n" - "2 refers to matchin instance in query"); + "2 refers to matching instance in query"); ADDOPTION(OPTSILENT,"-silent","do not output the chains\n" "and only report " "their lengths and scores"); ===================================== src/kurtz-basic/multiseq-adv.c ===================================== @@ -1471,7 +1471,7 @@ void echothedescription(FILE *outfp,Showdescinfo *showdesc,Multiseq *multiseq, if(!showdesc->defined) { - fprintf(stderr,"programm error: format specification for " + fprintf(stderr,"programming error: format specification for " "description is undefined\n"); exit(EXIT_FAILURE); } @@ -1879,7 +1879,7 @@ static Sint parsemultiseqprojectfilefromfileptr(Multiseq *multiseq, } if(fscanf(fp,"littleendian=%ld\n",&readint1) != 1) { - ERROR2("%s.%s contains illegal line defining the endianess", + ERROR2("%s.%s contains illegal line defining the endianness", indexname,PROJECTFILESUFFIX); return (Sint) -8; } ===================================== src/kurtz-basic/procopt.c ===================================== @@ -499,7 +499,7 @@ Sint checkdoubleexclude(Uint numofopts, DEBUG2(2,"Exclude %s %s\n",opt[indi].optname,opt[indj].optname); if(excludepairs[indi*numofopts+indj]) { - ERROR2("option %s and option %s already specfied as excluded", + ERROR2("option %s and option %s already specified as excluded", opt[indi].optname,opt[indj].optname); return (Sint) -1; } ===================================== src/kurtz/programversion.c ===================================== @@ -11,15 +11,12 @@ static void showgenericprogramversion(FILE *fp, char *cflags) { fprintf(fp, "%s (Vmatch) %s (%s)\n", program, version, compiledate); - fprintf(fp, "All rights reserved. Do not distribute.\n\n"); fprintf(fp, "libvmatch:\n"); fprintf(fp, "Copyright (c) 2000-2016 LScSA-Software GmbH\n\n"); #ifndef NOLICENSEMANAGER fprintf(fp, "libzlm:\n"); fprintf(fp, "Copyright (c) 2013-2016 Wikena GmbH\n\n"); #endif - fprintf(fp, "LScSA-Software GmbH is the exclusive worldwide distributor of " - "Vmatch.\n"); fprintf(fp, "Email: [email protected]\n\n"); fprintf(fp, "Compile flags: %s\n\n", cflags); fprintf(fp, "Vmatch is provided on an AS IS basis. The developers do not " View it on GitLab: https://salsa.debian.org/med-team/vmatch/compare/fe11155363ed12267a97c1eeea5f3758e63ad13f...5fc91a2e3775f1571a8a6e6bf8573dabc98cd666 -- View it on GitLab: https://salsa.debian.org/med-team/vmatch/compare/fe11155363ed12267a97c1eeea5f3758e63ad13f...5fc91a2e3775f1571a8a6e6bf8573dabc98cd666 You're receiving this email because of your account on salsa.debian.org.
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