Michael R. Crusoe pushed to branch master at Debian Med / vg
Commits: 5c1e0b81 by Michael R. Crusoe at 2020-01-13T15:40:42+01:00 libVCFH is unneeded - - - - - 2 changed files: - + debian/patches/libVCFH_unneeded - debian/patches/series Changes: ===================================== debian/patches/libVCFH_unneeded ===================================== @@ -0,0 +1,13 @@ +Author: Michael R. Crusoe <[email protected]> +Description: libVCFH is unneeded +--- vg.orig/Makefile ++++ vg/Makefile +@@ -36,7 +36,7 @@ + # Define libraries to link against. Make sure to always link statically against + # htslib and libdeflate and Protobuf so that we can use position-dependent code + # there for speed. +-LD_LIB_FLAGS:= -L$(CWD)/$(LIB_DIR) $(CWD)/$(LIB_DIR)/libvgio.a -lz -lvcflib -lgssw -lssw -lprotobuf -lsublinearLS $(CWD)/$(LIB_DIR)/libhts.a -ldeflate -lpthread -ljansson -lncurses -lgcsa2 -lgbwtgraph -lgbwt -ldivsufsort -ldivsufsort64 -lvcfh -lraptor2 -lpinchesandcacti -l3edgeconnected -lsonlib -lfml -llz4 -lstructures -lvw -lboost_program_options -lallreduce -lbdsg -lxg -lsdsl -lhandlegraph $(shell pkg-config --libs libfastahack) $(shell pkg-config --libs libsmithwaterman) ++LD_LIB_FLAGS:= -L$(CWD)/$(LIB_DIR) $(CWD)/$(LIB_DIR)/libvgio.a -lz -lvcflib -lgssw -lssw -lprotobuf -lsublinearLS $(CWD)/$(LIB_DIR)/libhts.a -ldeflate -lpthread -ljansson -lncurses -lgcsa2 -lgbwtgraph -lgbwt -ldivsufsort -ldivsufsort64 -lraptor2 -lpinchesandcacti -l3edgeconnected -lsonlib -lfml -llz4 -lstructures -lvw -lboost_program_options -lallreduce -lbdsg -lxg -lsdsl -lhandlegraph $(shell pkg-config --libs libfastahack) $(shell pkg-config --libs libsmithwaterman) + # Use pkg-config to find Cairo and all the libs it uses + LD_LIB_FLAGS += $(shell pkg-config --libs cairo jansson) + ===================================== debian/patches/series ===================================== @@ -25,3 +25,4 @@ static use_packaged_lz4 parallize_better use_packaged_libtsl-hopscotch-map-dev +libVCFH_unneeded View it on GitLab: https://salsa.debian.org/med-team/vg/commit/5c1e0b81867baf83961fd19ad33cde3528981996 -- View it on GitLab: https://salsa.debian.org/med-team/vg/commit/5c1e0b81867baf83961fd19ad33cde3528981996 You're receiving this email because of your account on salsa.debian.org.
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