Pranav Ballaney pushed to branch master at Debian Med / idba
Commits: c1fc0c70 by Pranav Ballaney at 2020-03-12T10:43:25+05:30 Renamed manpage folders - - - - - 09f63509 by Pranav Ballaney at 2020-03-13T10:32:25+05:30 Install bin/*.py in lib - - - - - 4a49bfb3 by Pranav Ballaney at 2020-03-13T21:58:43+05:30 Added data sources - - - - - 8685aa08 by Pranav Ballaney at 2020-03-13T22:13:38+05:30 Changed manpage directories in debian/createmanpages - - - - - 4f752ea3 by Pranav Ballaney at 2020-03-13T22:14:22+05:30 Updated changelog - - - - - 15 changed files: - debian/changelog - debian/createmanpages - debian/idba-extra/filter_blat.1 → debian/idba-extra-man/filter_blat.1 - debian/idba-extra/filter_contigs.1 → debian/idba-extra-man/filter_contigs.1 - debian/idba-extra/fq2fa.1 → debian/idba-extra-man/fq2fa.1 - debian/idba-extra/sim_reads.1 → debian/idba-extra-man/sim_reads.1 - debian/idba-extra/sim_reads_tran.1 → debian/idba-extra-man/sim_reads_tran.1 - debian/idba-extra.manpages - debian/idba/idba.1 → debian/idba-man/idba.1 - debian/idba/idba_hybrid.1 → debian/idba-man/idba_hybrid.1 - debian/idba/idba_tran.1 → debian/idba-man/idba_tran.1 - debian/idba/idba_ud.1 → debian/idba-man/idba_ud.1 - debian/idba.install - debian/idba.manpages - + debian/tests/test_data/data-source.sh Changes: ===================================== debian/changelog ===================================== @@ -18,8 +18,17 @@ idba (1.1.3-6) UNRELEASED; urgency=medium * Set upstream metadata fields: Bug-Database, Repository. * Make sure sim_reads will be found in test suite * Add few manpages for tools inside idba-extra (more would be nice) + * sim_reads.1 + * sim_reads_tran.1 + * Install from debian/tmp to avoid warnings from dh_missing - -- Pranav Ballaney <[email protected]> Tue, 10 Mar 2020 01:12:44 +0530 + [ Pranav Ballaney ] + * Renamed manpage folders + * Install bin/*.py in lib + * Added data sources + * Changed manpage directories in debian/createmanpages + + -- Pranav Ballaney <[email protected]> Fri, 13 Mar 2020 22:13:47 +0530 idba (1.1.3-5) unstable; urgency=medium ===================================== debian/createmanpages ===================================== @@ -1,5 +1,5 @@ #!/bin/sh -MANDIR=debian/idba +MANDIR=debian/idba-man mkdir -p $MANDIR VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'` @@ -41,7 +41,7 @@ echo "$MANDIR/*.1" > debian/${PROGNAME}.manpages ################ for idba-extra package -MANDIR=debian/idba-extra +MANDIR=debian/idba-extra-man mkdir -p $MANDIR progname=fq2fa ===================================== debian/idba-extra/filter_blat.1 → debian/idba-extra-man/filter_blat.1 ===================================== ===================================== debian/idba-extra/filter_contigs.1 → debian/idba-extra-man/filter_contigs.1 ===================================== ===================================== debian/idba-extra/fq2fa.1 → debian/idba-extra-man/fq2fa.1 ===================================== ===================================== debian/idba-extra/sim_reads.1 → debian/idba-extra-man/sim_reads.1 ===================================== ===================================== debian/idba-extra/sim_reads_tran.1 → debian/idba-extra-man/sim_reads_tran.1 ===================================== ===================================== debian/idba-extra.manpages ===================================== @@ -1 +1 @@ -debian/idba-extra/*.1 +debian/idba-extra-man/*.1 ===================================== debian/idba/idba.1 → debian/idba-man/idba.1 ===================================== ===================================== debian/idba/idba_hybrid.1 → debian/idba-man/idba_hybrid.1 ===================================== ===================================== debian/idba/idba_tran.1 → debian/idba-man/idba_tran.1 ===================================== ===================================== debian/idba/idba_ud.1 → debian/idba-man/idba_ud.1 ===================================== ===================================== debian/idba.install ===================================== @@ -1,5 +1,4 @@ usr/bin/i* usr/bin usr/bin/s* usr/bin usr/bin/v* usr/bin -# run-unittest.py should probably go to documentation -usr/bin/run-unittest.py usr/share/doc/idba +usr/bin/*.py usr/lib/idba ===================================== debian/idba.manpages ===================================== @@ -1 +1 @@ -debian/idba/*.1 +debian/idba-man/*.1 ===================================== debian/tests/test_data/data-source.sh ===================================== @@ -0,0 +1,13 @@ +# All the data used for testing was obtained from a Google Code repository, +# maintained by the authors of the program. +# https://code.google.com/archive/p/hku-idba/downloads + +# It was later modified to reduce the file size generated for testing. +# (The original files generate testing data on the order of gigabytes.) + +# For idba-tran +wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/hku-idba/tran-sample-data.tar.gz +# For idba-hybrid +wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/hku-idba/hybrid-sample-data.tar.gz +# For idba-ud +wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/hku-idba/lacto-genus.tar.gz View it on GitLab: https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c -- View it on GitLab: https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c You're receiving this email because of your account on salsa.debian.org.
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