Steffen Möller pushed to branch master at Debian Med / bcbio
Commits:
421360cf by Steffen Möller at 2020-03-26T02:02:44+00:00
Update TODO - dnapi was accepted
- - - - -
1 changed file:
- debian/TODO
Changes:
=====================================
debian/TODO
=====================================
@@ -44,11 +44,11 @@ convinced that this is no longer required.
pyyaml https://pyyaml.org/wiki/PyYAML
seqcluster # not yet in new
To be packaged
- dnapi https://github.com/jnktsj/DNApi
fadapa https://github.com/fadapa/fadapa
pycrypto
Available in Debian but not added as a dependency (yet)
boto
+ dnapi https://github.com/jnktsj/DNApi
htslib # not called directly?
#pip # ridiculous
openssl >=1.1.1c,<1.1.2a
@@ -98,11 +98,6 @@ package libjs-scribl (rejected)
A surprisingly neat JavaScript library to show genomic features
Needed for DFSG-compliance of seqcluster
-Package dnapi with python3-dnapilib
- https://github.com/jnktsj/DNApi
- Likely a "recommends" only:
- bcbio/srna/sample.py: from dnapilib.apred import
iterative_adapter_prediction
-
Package MultiQC (in crash space) (rejected from new)
https://salsa.debian.org/med-team/multiqc
Addressed https://github.com/ewels/MultiQC/issues/800 by substuting
View it on GitLab:
https://salsa.debian.org/med-team/bcbio/-/commit/421360cf768587c07f83178afc52a01d5b96e89d
--
View it on GitLab:
https://salsa.debian.org/med-team/bcbio/-/commit/421360cf768587c07f83178afc52a01d5b96e89d
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