Michael R. Crusoe pushed to branch master at Debian Med / proteinortho
Commits: b85c2b5b by Michael R. Crusoe at 2020-04-04T11:36:44+02:00 tweak patch - - - - - 1 changed file: - debian/patches/deb_diamond Changes: ===================================== debian/patches/deb_diamond ===================================== @@ -2,7 +2,7 @@ Author: Michael R. Crusoe <[email protected]> Description: Find some Debian packaged software under their original names --- proteinortho.orig/proteinortho6.pl +++ proteinortho/proteinortho6.pl -@@ -535,6 +535,9 @@ +@@ -548,6 +548,9 @@ $NC=""; } @@ -23,3 +23,12 @@ Description: Find some Debian packaged software under their original names echo "$(ORANGE)diamond missing, skipping...$(NC)"; \ else \ ./proteinortho6.pl -silent -force -project=test_diamond -p=diamond test/*.faa; \ +@@ -274,7 +274,7 @@ + fi + + @echo -n " [4/12] -p=diamond (--moresensitive) test (subparaBlast): " +- @if [ "$(shell which diamond)" = "" ]; then\ ++ @if [ "$(shell which diamond-aligner)" = "" ]; then\ + echo "$(ORANGE)diamond missing, skipping...$(NC)"; \ + else \ + ./proteinortho6.pl -silent -force -project=test_diamondmoresensitive -p=diamond -subparaBlast="--more-sensitive" test/*.faa; \ View it on GitLab: https://salsa.debian.org/med-team/proteinortho/-/commit/b85c2b5b0e3ca409ddc2d0fb3fc9e212107649ec -- View it on GitLab: https://salsa.debian.org/med-team/proteinortho/-/commit/b85c2b5b0e3ca409ddc2d0fb3fc9e212107649ec You're receiving this email because of your account on salsa.debian.org.
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