Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq
Commits: 3775625c by Michael R. Crusoe at 2020-04-08T17:27:33+02:00 adapt to new naming format - - - - - 8f27c705 by Michael R. Crusoe at 2020-04-08T17:27:35+02:00 New upstream version 2.8.6+dfsg - - - - - b3e95494 by Michael R. Crusoe at 2020-04-08T17:27:36+02:00 new upstream release - - - - - c9a63419 by Michael R. Crusoe at 2020-04-08T17:27:37+02:00 debhelper-compat 12 - - - - - 9fb16f4c by Michael R. Crusoe at 2020-04-08T17:27:37+02:00 Standards-Version: 4.4.0 - - - - - c4e425d1 by Michael R. Crusoe at 2020-04-08T17:27:38+02:00 refresh patches - - - - - 6f794212 by Michael R. Crusoe at 2020-04-08T17:27:38+02:00 adjust to new build layout - - - - - f4ddeb07 by Michael R. Crusoe at 2020-04-08T17:27:39+02:00 python3 - - - - - 074e2939 by Michael R. Crusoe at 2020-04-08T17:27:39+02:00 TODO: autopkgtests fail: "there is no package called edgeR" - - - - - 22 changed files: - + .gitignore - + .travis.yml - Analysis/DifferentialExpression/GOplot.Rscript - Analysis/DifferentialExpression/PtR - + Analysis/DifferentialExpression/add_annotations_to_GO_and_lengths_file.R - Analysis/DifferentialExpression/analyze_diff_expr.pl - Analysis/DifferentialExpression/prep_n_run_GOplot.pl - Analysis/DifferentialExpression/run_DE_analysis.pl - Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py - Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py - + Analysis/SuperTranscripts/pylib/Compact_graph_pruner.py - Analysis/SuperTranscripts/pylib/Compact_graph_whole.py - Analysis/SuperTranscripts/pylib/Node_alignment.py - Analysis/SuperTranscripts/pylib/Splice_model_refiner.py - Analysis/SuperTranscripts/pylib/TGraph.py - Analysis/SuperTranscripts/pylib/TNode.py - Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py - Butterfly/src/src/Path.java - Butterfly/src/src/TransAssembly_allProbPaths.java - Changelog.txt - + Chrysalis/CMakeLists.txt - − Chrysalis/GraphFromFasta_MPI.cc The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/e028b2a6a60ea8e3df0055dac543156fa4299f6e...074e293958abf910a626beef34f1938003cefcc6 -- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/e028b2a6a60ea8e3df0055dac543156fa4299f6e...074e293958abf910a626beef34f1938003cefcc6 You're receiving this email because of your account on salsa.debian.org.
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