Michael R. Crusoe pushed to branch master at Debian Med / kmer
Commits: 81d0ff4a by Antoni Villalonga at 2020-04-19T10:11:50+00:00 Updated spelling.patch & d/upstream/metadata: Repository and Bug - - - - - 4 changed files: - debian/changelog - debian/man/leaff/leaff.1 - debian/patches/spelling.patch - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +kmer (0~20150903+r2013-8) UNRELEASED; urgency=medium + + * Team upload. + + [ Antoni Villalonga ] + * d/upstream/metadata: Repository and Bug + * Updated spelling.patch + +-- Antoni Villalonga <[email protected]> Sat, 19 Apr 2020 17:59:48 +0200 + kmer (0~20150903+r2013-7) unstable; urgency=medium * Team upload. ===================================== debian/man/leaff/leaff.1 ===================================== @@ -72,7 +72,7 @@ ANALYSIS FUNCTIONS --partitionmap [ n[gmk]bp | n ] a.fasta Partition the sequences into roughly equal size pieces of size nbp, nkbp, nmbp or ngbp; or into n roughly equal sized - parititions. Sequences larger that the partition size are + partitions. Sequences larger that the partition size are in a partition by themself. --partitionmap writes a description of the partition to stdout; --partiton creates a fasta file 'prefix-###.fasta' for each partition. ===================================== debian/patches/spelling.patch ===================================== @@ -1,10 +1,10 @@ Description: Fix spelling -Author: Andreas Tille <[email protected]> -Last-Update: Sun, 05 Aug 2018 05:47:52 +0200 +Author: Andreas Tille <[email protected]>, Antoni Villalonga <[email protected]> +Last-Update: Sat, 11 Apr 2020 22:30:00 +0200 --- a/libutil/bitPackedFile.C +++ b/libutil/bitPackedFile.C -@@ -157,7 +157,7 @@ bitPackedFile::bitPackedFile(char const +@@ -157,7 +157,7 @@ } else if ((at == uint64Swap(ac)) && (bt == uint64Swap(bc))) { endianess_flipped = true; } else { @@ -15,7 +15,7 @@ Last-Update: Sun, 05 Aug 2018 05:47:52 +0200 } else { --- a/libkmer/driver-existDB.C +++ b/libkmer/driver-existDB.C -@@ -178,7 +178,7 @@ const char *usage = +@@ -178,7 +178,7 @@ "\n" " -testexhaustive some.fasta some.meryl\n" " -- Build an existDB table from some.fasta, check _EVERY_ mer\n" @@ -26,7 +26,7 @@ Last-Update: Sun, 05 Aug 2018 05:47:52 +0200 "\n"; --- a/libutil/palloc.c +++ b/libutil/palloc.c -@@ -133,7 +133,7 @@ palloc2(size_t size, void *handle) { +@@ -133,7 +133,7 @@ root->_cn = root->_nl; if (root->_dbg > 0) @@ -37,7 +37,7 @@ Last-Update: Sun, 05 Aug 2018 05:47:52 +0200 root->_cn->_dt = (char *)really_allocate(root->_bs); --- a/sim4dbutils/parseSNP.C +++ b/sim4dbutils/parseSNP.C -@@ -491,7 +491,7 @@ main(int argc, char **argv) { +@@ -491,7 +491,7 @@ fprintf(stderr, " default, and if posTag is not found.\n"); fprintf(stderr, "\n"); fprintf(stderr, " TAGS: The number immediately after the first\n"); @@ -46,3 +46,14 @@ Last-Update: Sun, 05 Aug 2018 05:47:52 +0200 fprintf(stderr, "\n"); fprintf(stderr, " -o offset An additive offset to the SNP position.\n"); fprintf(stderr, " The default is 0.\n"); +--- a/leaff/leaff.C ++++ b/leaff/leaff.C +@@ -126,7 +126,7 @@ + fprintf(stderr, " --partitionmap [ n[gmk]bp | n ] a.fasta\n"); + fprintf(stderr, " Partition the sequences into roughly equal size pieces of\n"); + fprintf(stderr, " size nbp, nkbp, nmbp or ngbp; or into n roughly equal sized\n"); +- fprintf(stderr, " parititions. Sequences larger that the partition size are\n"); ++ fprintf(stderr, " partitions. Sequences larger that the partition size are\n"); + fprintf(stderr, " in a partition by themself. --partitionmap writes a\n"); + fprintf(stderr, " description of the partition to stdout; --partiton creates\n"); + fprintf(stderr, " a fasta file 'prefix-###.fasta' for each partition.\n"); ===================================== debian/upstream/metadata ===================================== @@ -42,3 +42,7 @@ Registry: Entry: atac - Name: conda:bioconda Entry: atac, meryl +Repository: svn://svn.code.sf.net/p/kmer/code/trunk +Repository-Browse: https://sourceforge.net/p/kmer/code/HEAD/tree/ +Bug-Database: https://sourceforge.net/p/kmer/bugs/ +Bug-Submit: https://sourceforge.net/p/kmer/bugs/new/ View it on GitLab: https://salsa.debian.org/med-team/kmer/-/commit/81d0ff4a890f296b8a02aa31baf2689293a1e005 -- View it on GitLab: https://salsa.debian.org/med-team/kmer/-/commit/81d0ff4a890f296b8a02aa31baf2689293a1e005 You're receiving this email because of your account on salsa.debian.org.
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