Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq
Commits: 2831268b by Michael R. Crusoe at 2019-10-14T10:49:01+02:00 New upstream version 2.8.6+dfsg - - - - - 1412d7f7 by Michael R. Crusoe at 2020-04-26T16:55:52+02:00 add build-dep on r-bioc-rots - - - - - 8cbef3e0 by Michael R. Crusoe at 2020-04-26T17:01:55+02:00 routine-update: New upstream version - - - - - 1c446ac5 by Michael R. Crusoe at 2020-04-26T17:02:08+02:00 New upstream version 2.10.0+dfsg - - - - - 823be8fb by Michael R. Crusoe at 2020-04-26T17:05:43+02:00 Update upstream source from tag 'upstream/2.10.0+dfsg' Update to upstream version '2.10.0+dfsg' with Debian dir b5013a0629527e43eef7003a3144fb2349436359 - - - - - f11e454c by Michael R. Crusoe at 2020-04-26T17:05:43+02:00 routine-update: Standards-Version: 4.5.0 - - - - - bf83f7dd by Michael R. Crusoe at 2020-04-26T17:31:06+02:00 Refresh patches - - - - - cdd32fba by Michael R. Crusoe at 2020-04-26T17:31:40+02:00 routine-update: Add salsa-ci file - - - - - 64eb0ca4 by Michael R. Crusoe at 2020-04-26T17:31:41+02:00 routine-update: Rules-Requires-Root: no - - - - - 097cb276 by Michael R. Crusoe at 2020-04-26T17:41:31+02:00 Use secure URI in Homepage field. Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - 7b171d3b by Michael R. Crusoe at 2020-04-26T18:20:50+02:00 debian/rules: seqtk-trinity now has a unversioned path - - - - - 44e5a36e by Michael R. Crusoe at 2020-04-26T18:24:26+02:00 debian/patches/butterfly: restore missing Butterfly sources - - - - - e9f74728 by Michael R. Crusoe at 2020-04-26T19:05:40+02:00 many more deps - - - - - a50c58bf by Michael R. Crusoe at 2020-04-26T23:23:19+02:00 Install the new bamsfilter plugin - - - - - 550d8458 by Michael R. Crusoe at 2020-04-26T23:33:43+02:00 fixup heatmap - - - - - 30 changed files: - .gitmodules - Analysis/DifferentialExpression/Glimma.Trinity.Rscript - Analysis/DifferentialExpression/PtR - + Analysis/DifferentialExpression/R/edgeR.TMM.minimal.R - Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl - Analysis/DifferentialExpression/run_DE_analysis.pl - Analysis/DifferentialExpression/run_GOseq.pl - Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl - Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py - Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl - Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py - Analysis/SuperTranscripts/pylib/Node_alignment.py - − Butterfly/.err - + Butterfly/README.md - − Butterfly/build_jar.xml - − Butterfly/src/.classpath - − Butterfly/src/.err - − Butterfly/src/.project - − Butterfly/src/.settings/org.eclipse.jdt.core.prefs - − Butterfly/src/README - − Butterfly/src/_t_seqA.fa - − Butterfly/src/_t_seqB.fa - − Butterfly/src/build.xml - − Butterfly/src/runExample.sh - − Butterfly/src/run_NWalign.sh - − Butterfly/src/run_butterfly_nonJar.sh - − Butterfly/src/sample_data/c1.graph.out - − Butterfly/src/sample_data/c1.graph.reads - − Butterfly/src/src/AlignmentStats.java - − Butterfly/src/src/BFLY_GLOBALS.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/d1a9ff02b65a7ffb7f064617b45dd1f53c1a203a...550d8458ef63ffaeb289c1e494e99962051a1ea9 -- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/d1a9ff02b65a7ffb7f064617b45dd1f53c1a203a...550d8458ef63ffaeb289c1e494e99962051a1ea9 You're receiving this email because of your account on salsa.debian.org.
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