Étienne Mollier pushed to branch master at Debian Med / python-pauvre
Commits:
99a99a4a by Etienne Mollier at 2020-04-28T21:42:37+02:00
upstream patch fix kwargs
- - - - -
2 changed files:
- + debian/patches/fix-kwargs.patch
- debian/patches/series
Changes:
=====================================
debian/patches/fix-kwargs.patch
=====================================
@@ -0,0 +1,38 @@
+Description: fixed a small error with kwargs
+ cherry picked from upstream, fixes a crash when running the provided test
+ suite:
+ plotting in the following window:
+ 0 <= Q-score (x-axis) <= 14.0
+ 0 <= length (y-axis) <= 223383
+ .
+ Traceback (most recent call last):
+ File "/usr/bin/pauvre", line 11, in <module>
+ load_entry_point('pauvre==0.1924', 'console_scripts', 'pauvre')()
+ File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 630, in
main
+ args.func(parser, args)
+ File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 64, in
run_subtool
+ submodule.run(args)
+ File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 403, in
run
+ margin_plot(df=df.dropna(), **vars(args))
+ File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 381, in
margin_plot
+ if kwargs["BASENAME"] is None and not kwargs["path"] is None:
+ KeyError: 'path'
+Origin: upstream,
https://github.com/conchoecia/pauvre/commit/90fbe2f4c190ff897dfc8ae12971d5865682fc8a
+Forwarded:
https://github.com/conchoecia/pauvre/commit/90fbe2f4c190ff897dfc8ae12971d5865682fc8a
+Applied-Upstream:
https://github.com/conchoecia/pauvre/commit/90fbe2f4c190ff897dfc8ae12971d5865682fc8a
+Last-Update: 2020-04-28
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- python-pauvre.orig/pauvre/marginplot.py
++++ python-pauvre/pauvre/marginplot.py
+@@ -378,9 +378,7 @@
+ min_plot_qual, max_plot_qual, min_plot_length, max_plot_length),
+ file=stderr)
+ # Print image(s)
+- if kwargs["BASENAME"] is None and not kwargs["path"] is None:
+- file_base = kwargs["BASENAME"]
+- elif kwargs["BASENAME"] is None:
++ if kwargs["BASENAME"] is None:
+ file_base = opath.splitext(opath.basename(kwargs["fastq"]))[0]
+ else:
+ file_base = kwargs["BASENAME"]
=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ fix-scikit-learn-resource-load.patch
2to3.patch
typo-redwood.patch
lsi-test-args.patch
+fix-kwargs.patch
View it on GitLab:
https://salsa.debian.org/med-team/python-pauvre/-/commit/99a99a4a6ebf702a7dfe355e621ba397a7bfdad0
--
View it on GitLab:
https://salsa.debian.org/med-team/python-pauvre/-/commit/99a99a4a6ebf702a7dfe355e621ba397a7bfdad0
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