Steffen Möller pushed to branch master at Debian Med / genometester
Commits: cffef4cc by Steffen Moeller at 2020-05-17T20:06:48+02:00 New upstream version 4.0+git20200511.91cecb5+dfsg - - - - - 016ace6e by Steffen Moeller at 2020-05-17T20:06:48+02:00 routine-update: New upstream version - - - - - 58e80171 by Steffen Moeller at 2020-05-17T20:06:48+02:00 Update upstream source from tag 'upstream/4.0+git20200511.91cecb5+dfsg' Update to upstream version '4.0+git20200511.91cecb5+dfsg' with Debian dir 5efe3c9d5388655e1eed16c8c02f11d023cf1b54 - - - - - c8568ad9 by Steffen Moeller at 2020-05-17T20:06:48+02:00 routine-update: Standards-Version: 4.5.0 - - - - - fd619d64 by Steffen Moeller at 2020-05-17T20:06:49+02:00 routine-update: debhelper-compat 12 - - - - - eb3d6a87 by Steffen Moeller at 2020-05-17T20:06:51+02:00 routine-update: Add salsa-ci file - - - - - 7cdc1e15 by Steffen Moeller at 2020-05-17T20:06:51+02:00 routine-update: Rules-Requires-Root: no - - - - - e1c46a6f by Steffen Moeller at 2020-05-17T20:06:54+02:00 Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. - - - - - e86fee6c by Steffen Moeller at 2020-05-17T20:07:11+02:00 routine-update: Ready to upload to unstable - - - - - 830f259f by Steffen Moeller at 2020-05-17T20:10:56+02:00 Clean-up. - - - - - 8 changed files: - + debian/TODO - debian/changelog - − debian/compat - debian/control - debian/rules - + debian/salsa-ci.yml - debian/upstream/metadata - src/database.c Changes: ===================================== debian/TODO ===================================== @@ -0,0 +1 @@ +Add manpage: W: genometester: binary-without-manpage usr/bin/gdistribution ===================================== debian/changelog ===================================== @@ -1,3 +1,18 @@ +genometester (4.0+git20200511.91cecb5+dfsg-1) unstable; urgency=medium + + * Team upload. + * New upstream version + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 12 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, + Repository-Browse. (routine-update) + * Added d/TODO to indicate missing man page (also a lintian warning) + * Improved clean. + + -- Steffen Moeller <[email protected]> Sun, 17 May 2020 20:06:55 +0200 + genometester (4.0+git20180508.a9c14a6+dfsg-1) unstable; urgency=medium * Remove binaries from upstream source ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -4,11 +4,12 @@ Uploaders: Liubov Chuprikova <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~) -Standards-Version: 4.2.1 +Build-Depends: debhelper-compat (= 12) +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/genometester Vcs-Git: https://salsa.debian.org/med-team/genometester.git Homepage: https://github.com/bioinfo-ut/GenomeTester4 +Rules-Requires-Root: no Package: genometester Architecture: any ===================================== debian/rules ===================================== @@ -16,3 +16,7 @@ override_dh_auto_build: dh_auto_build -- gmer_counter dh_auto_build -- gmer_caller dh_auto_build -- gdistribution + +override_dh_auto_clean: + dh_auto_clean + rm -f src/gdistribution src/gmer_caller src/gmer_counter ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,3 +1,5 @@ +Bug-Database: https://github.com/bioinfo-ut/GenomeTester4/issues +Bug-Submit: https://github.com/bioinfo-ut/GenomeTester4/issues/new Reference: - Author: Lauris Kaplinski and Maarja Lepamets and Maido Remm Title: > @@ -45,3 +47,5 @@ Registry: Entry: genometester - Name: conda:bioconda Entry: genometester4 +Repository: https://github.com/bioinfo-ut/GenomeTester4.git +Repository-Browse: https://github.com/bioinfo-ut/GenomeTester4 ===================================== src/database.c ===================================== @@ -380,14 +380,17 @@ read_database_from_binary (KMerDB *db, const unsigned char *cdata, unsigned long unsigned int version; unsigned int has_index = 0; - if (memcmp (cdata + cpos, DBKEY, 4)) return 0; + if (memcmp (cdata + cpos, DBKEY, 4)) { + fprintf (stderr, "read_database_from_binary: Invalid DB key\n"); + return 0; + } cpos += 4; memcpy (&major, cdata + cpos, 2); cpos += 2; memcpy (&minor, cdata + cpos, 2); cpos += 2; version = (major << 16) | minor; - if (version < 1) return 0; + /* if (version < 1) return 0; */ if (version >= 3) has_index = 1; memcpy (&db->wordsize, cdata + cpos, 4); View it on GitLab: https://salsa.debian.org/med-team/genometester/-/compare/7e1b1f81bd8d3cf3d579421ac15833e5c208378f...830f259f40cad725e41caf8bc0208b8d96dc784b -- View it on GitLab: https://salsa.debian.org/med-team/genometester/-/compare/7e1b1f81bd8d3cf3d579421ac15833e5c208378f...830f259f40cad725e41caf8bc0208b8d96dc784b You're receiving this email because of your account on salsa.debian.org.
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