Steffen Möller pushed to branch master at Debian Med / kma
Commits:
b75e4f66 by Steffen Moeller at 2020-05-19T23:18:48+02:00
New upstream version 1.2.26
- - - - -
0d0885d5 by Steffen Moeller at 2020-05-19T23:18:48+02:00
routine-update: New upstream version
- - - - -
8e4063cc by Steffen Moeller at 2020-05-19T23:18:49+02:00
Update upstream source from tag 'upstream/1.2.26'
Update to upstream version '1.2.26'
with Debian dir 63ddb2011e1f707a348085505d2f44302ab5e4ad
- - - - -
0b1e5ffa by Steffen Moeller at 2020-05-19T23:19:11+02:00
routine-update: Ready to upload to unstable
- - - - -
3 changed files:
- assembly.c
- debian/changelog
- version.h
Changes:
=====================================
assembly.c
=====================================
@@ -275,6 +275,7 @@ void * assemble_KMA_threaded(void *arg) {
static volatile int excludeIn[1] = {0}, excludeOut[1] = {0},
excludeMatrix[1] = {0}, mainTemplate = -2, thread_wait = 0;
static char *template_name;
+ static HashMap_index *template_index;
Assemble_thread *thread = arg;
int i, j, t_len, aln_len, start, end, bias, myBias, gaps, pos, spin,
sam;
int read_score, depthUpdate, bestBaseScore, bestScore, template,
asm_len;
@@ -295,7 +296,6 @@ void * assemble_KMA_threaded(void *arg) {
AssemInfo *matrix;
AlnPoints *points;
NWmat *NWmatrices;
- HashMap_index *template_index;
/* get input */
template = thread->template;
@@ -319,7 +319,6 @@ void * assemble_KMA_threaded(void *arg) {
sam = thread->sam;
spin = thread->spin;
thread_num = thread->thread_num;
- template_index = thread->template_index;
if(template != -2) {
/* all assemblies done,
@@ -334,6 +333,7 @@ void * assemble_KMA_threaded(void *arg) {
/* Allocate assembly arrays */
lock(excludeMatrix);
template_name = thread->template_name;
+ template_index = thread->template_index;
t_len = template_index->len;
matrix->len = t_len;
if(matrix->size < (t_len << 1)) {
=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+kma (1.2.26-1) unstable; urgency=medium
+
+ * Team upload.
+ * New upstream version
+
+ -- Steffen Moeller <[email protected]> Tue, 19 May 2020 23:18:54 +0200
+
kma (1.2.25-1) unstable; urgency=medium
* Team upload.
=====================================
version.h
=====================================
@@ -17,4 +17,4 @@
* limitations under the License.
*/
-#define KMA_VERSION "1.2.25"
+#define KMA_VERSION "1.2.26"
View it on GitLab:
https://salsa.debian.org/med-team/kma/-/compare/e76daa8b592d8c867ab1bf912ee5e3ca65a0e076...0b1e5ffa16583366754526428c931df6a6aee376
--
View it on GitLab:
https://salsa.debian.org/med-team/kma/-/compare/e76daa8b592d8c867ab1bf912ee5e3ca65a0e076...0b1e5ffa16583366754526428c931df6a6aee376
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