Aaron M. Ucko pushed to branch master at Debian Med / sra-sdk
Commits: b36b20cb by Aaron M. Ucko at 2020-05-25T22:45:08-04:00 sra-sdk 2.10.6+dfsg-5: Reenable legacy schema for sra-load (#961347) * debian/patches/reenable_legacy_schema_in_sra_load.patch: New patch to make use of ncbi-vdb's new SRAUseLegacyDefaultSchema toggle, unbreaking tools/sra-load (fastq-load et al.) (Closes: #961347.) * debian/control: Ensure that this toggle is available at build time and at runtime. - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/reenable_legacy_schema_in_sra_load.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +sra-sdk (2.10.6+dfsg-5) unstable; urgency=medium + + * debian/patches/reenable_legacy_schema_in_sra_load.patch: New patch to + make use of ncbi-vdb's new SRAUseLegacyDefaultSchema toggle, + unbreaking tools/sra-load (fastq-load et al.) (Closes: #961347.) + * debian/control: Ensure that this toggle is available at build time and + at runtime. + + -- Aaron M. Ucko <u...@debian.org> Mon, 25 May 2020 22:45:07 -0400 + sra-sdk (2.10.6+dfsg-4) unstable; urgency=medium * Account for new sratools setup. (Closes: #961256.) ===================================== debian/control ===================================== @@ -7,7 +7,7 @@ Section: science Priority: optional Build-Depends: debhelper-compat (= 12), libngs-sdk-dev (>= 2.9.0), - libncbi-vdb-dev (>= 2.10.6+dfsg-2~), + libncbi-vdb-dev (>= 2.10.6+dfsg-3~), libvdb-sqlite-dev, libfuse-dev, libhdf5-dev, @@ -23,6 +23,7 @@ Rules-Requires-Root: no Package: sra-toolkit Architecture: amd64 Depends: ${shlibs:Depends}, + libncbi-wvdb2 (>= 2.10.6+dfsg-3~), ${misc:Depends} Recommends: med-config (>= 2.1) Description: utilities for the NCBI Sequence Read Archive ===================================== debian/patches/reenable_legacy_schema_in_sra_load.patch ===================================== @@ -0,0 +1,18 @@ +--- a/tools/sra-load/loader.c ++++ b/tools/sra-load/loader.c +@@ -38,6 +38,7 @@ + #include <kfs/directory.h> + #include <kdb/meta.h> + #include <kapp/loader-meta.h> ++#include <sra/sraschema.h> + #include <sra/wsradb.h> + + #include <os-native.h> +@@ -904,6 +905,7 @@ rc_t KMain(int argc, char *argv[]) + if (rc == 0) { + rc = KDirectoryNativeDir(&s_Directory); + } ++ SRAUseLegacyDefaultSchema = true; + /* Parse command line arguments */ + if (rc == 0) { + rc = TArgsMake(&args, argc, argv); ===================================== debian/patches/series ===================================== @@ -19,3 +19,4 @@ ignore_failing_test_for_the_moment_FIXME.patch python3 use_exposed_headers.patch use_unversioned_tools.patch +reenable_legacy_schema_in_sra_load.patch View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/commit/b36b20cb22242853e29881740e1cdfc0893143cd -- View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/commit/b36b20cb22242853e29881740e1cdfc0893143cd You're receiving this email because of your account on salsa.debian.org.
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