Pranav Ballaney pushed to branch master at Debian Med / paml
Commits: f8bfdc03 by Pranav Ballaney at 2020-05-29T09:20:59+05:30 Add autopkgtests - - - - - 5 changed files: - + debian/README.test - debian/changelog - debian/paml.docs - + debian/tests/control - + debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +paml (4.9j+dfsg-3) UNRELEASED; urgency=medium + + [ Etienne Mollier ] + * upstream informed of the patch + + [ Pranav Ballaney ] + * Add autopkgtests + + -- Pranav Ballaney <[email protected]> Fri, 29 May 2020 09:20:27 +0530 + paml (4.9j+dfsg-2) unstable; urgency=medium * Team upload. ===================================== debian/paml.docs ===================================== @@ -1,2 +1,4 @@ *.txt debian/profile.d +debian/tests/run-unit-test +debian/README.test \ No newline at end of file ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,80 @@ +#!/bin/bash +set -e + +pkg=paml + +export LC_ALL=C.UTF-8 +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + # Double quote below to expand the temporary directory variable now versus + # later is on purpose. + # shellcheck disable=SC2064 + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" + +echo -e "\e[93m\e[1mTest 1\e[0m" +cd HIVNSsites +codeml +cd .. +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 2\e[0m" +cd lysin +codeml +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 3\e[0m" +codeml codemlYangSwanson2002.ctl +cd .. +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 4\e[0m" +cd lysozyme +codeml +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 5\e[0m" +codeml lysozymeSmall.ctl +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 6\e[0m" +codeml lysozymeLarge.ctl +cd .. +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 7\e[0m" +cd MouseLemurs +baseml +cd .. +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 8\e[0m" +cd mtCDNA +codeml codeml.AAcodon.ctl +cd .. +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 9\e[0m" +cd mtCDNAape +codeml +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 10\e[0m" +codeml codeml.HC.ctl +cd .. +echo -e "\e[92m\e[1mPassed\e[0m" +echo + View it on GitLab: https://salsa.debian.org/med-team/paml/-/commit/f8bfdc03ed385d37534590fc198496f05505f276 -- View it on GitLab: https://salsa.debian.org/med-team/paml/-/commit/f8bfdc03ed385d37534590fc198496f05505f276 You're receiving this email because of your account on salsa.debian.org.
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